Model info
Transcription factorRFX2
ModelRFX2_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length18
Quality
A
Motif rank
0
ConsensusYbGTTGCCWWGGvRACvv
Best auROC (human)0.9758793403986075
Best auROC (mouse)0.9911121146558779
Peak sets in benchmark (human)7
Peak sets in benchmark (mouse)7
Aligned words426
TF familyRFX-related factors{3.3.3}
TF subfamilyRFX2{3.3.3.0.2}
HGNC9983
EntrezGene5990
UniProt IDRFX2_HUMAN
UniProt ACP48378
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 0.95621
0.0005 2.31771
0.0001 5.18676
GTEx tissue expression atlas RFX2 expression
ReMap ChIP-seq dataset list RFX2 datasets
Motifs in JASPAR
PCM
ACGT
0118.0241.044.0120.0
0255.075.0173.0120.0
030.00.0423.00.0
040.03.00.0420.0
058.034.02.0379.0
0618.01.0398.06.0
071.0383.01.038.0
080.0339.00.084.0
09340.023.024.036.0
1055.03.049.0316.0
1133.00.0388.02.0
1249.03.0370.01.0
1366.0226.082.049.0
14244.015.0127.037.0
15358.023.031.011.0
1610.0363.07.043.0
17130.0109.0140.044.0
1881.0112.0188.042.0
PWM
ACGT
01-1.7040.816-0.8570.125
02-0.641-0.3380.4870.125
03-4.262-4.2621.376-4.262
04-4.262-3.169-4.2621.369
05-2.423-1.105-3.4191.266
06-1.704-3.7541.315-2.659
07-3.7541.277-3.754-0.999
08-4.2621.155-4.262-0.227
091.158-1.476-1.436-1.051
10-0.641-3.169-0.7531.085
11-1.134-4.2621.29-3.419
12-0.753-3.1691.242-3.754
13-0.4630.752-0.25-0.753
140.828-1.8710.181-1.024
151.209-1.476-1.194-2.149
16-2.2321.223-2.534-0.88
170.2040.030.277-0.857
18-0.2620.0570.569-0.902