Model info
Transcription factorRFX2
ModelRFX2_HUMAN.H11MO.1.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length12
Quality
A
Motif rank
1
ConsensusYbGTTGCCWKGG
Best auROC (human)0.9649396965393914
Best auROC (mouse)0.9960458308184784
Peak sets in benchmark (human)7
Peak sets in benchmark (mouse)7
Aligned words501
TF familyRFX-related factors{3.3.3}
TF subfamilyRFX2{3.3.3.0.2}
HGNC9983
EntrezGene5990
UniProt IDRFX2_HUMAN
UniProt ACP48378
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 2.983525
0.0005 4.19496
0.0001 6.732415
GTEx tissue expression atlas RFX2 expression
ReMap ChIP-seq dataset list RFX2 datasets
Motifs in JASPAR
PCM
ACGT
0120.0281.079.0120.0
0238.0106.0188.0168.0
032.00.0497.01.0
040.01.00.0499.0
0510.019.03.0468.0
0617.06.0460.017.0
071.0466.01.032.0
081.0375.00.0124.0
09395.030.022.053.0
1062.019.092.0327.0
1135.02.0462.01.0
1275.019.0404.02.0
PWM
ACGT
01-1.770.803-0.452-0.04
02-1.163-0.1630.4040.293
03-3.573-4.41.371-3.903
04-4.4-3.903-4.41.375
05-2.394-1.818-3.3251.311
06-1.92-2.8191.294-1.92
07-3.9031.307-3.903-1.328
08-3.9031.09-4.4-0.008
091.142-1.389-1.681-0.841
10-0.689-1.818-0.3020.954
11-1.242-3.5731.298-3.903
12-0.503-1.8181.165-3.573