Model info
Transcription factorRfx2
ModelRFX2_MOUSE.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length22
Quality
A
Motif rank
0
ConsensusvbSnGTYRYYdKGGvRMYvdvn
Best auROC (human)0.937
Best auROC (mouse)0.997
Peak sets in benchmark (human)7
Peak sets in benchmark (mouse)7
Aligned words132
TF familyRFX-related factors {3.3.3}
TF subfamilyRFX2 {3.3.3.0.2}
MGIMGI:106583
EntrezGeneGeneID:19725
(SSTAR profile)
UniProt IDRFX2_MOUSE
UniProt ACP48379
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 3.12566
0.0005 4.090859999999999
0.0001 6.13791
GTEx tissue expression atlas Rfx2 expression
Motifs in JASPAR
PCM
ACGT
0117.044.063.08.0
0212.034.070.016.0
036.076.042.08.0
0423.024.043.042.0
0510.01.0118.03.0
061.07.00.0124.0
078.026.03.095.0
0814.05.0100.013.0
095.0102.04.021.0
103.097.05.027.0
1195.03.017.017.0
1213.06.030.083.0
1315.02.0114.01.0
1415.07.0109.01.0
1541.053.020.018.0
1672.03.044.013.0
1796.019.013.04.0
188.092.010.022.0
1921.044.062.05.0
2049.013.055.015.0
2123.022.071.016.0
2245.020.034.033.0
PWM
ACGT
01-0.630.2790.629-1.311
02-0.9510.0290.733-0.687
03-1.5560.8140.233-1.311
04-0.346-0.3050.2560.233
05-1.115-2.7351.248-2.093
06-2.735-1.426-3.3331.297
07-1.311-0.229-2.0931.034
08-0.81-1.7051.084-0.878
09-1.7051.104-1.88-0.432
10-2.0931.054-1.705-0.193
111.034-2.093-0.63-0.63
12-0.878-1.556-0.0920.901
13-0.747-2.3631.214-2.735
14-0.747-1.4261.17-2.735
150.210.46-0.478-0.577
160.761-2.0930.279-0.878
171.044-0.526-0.878-1.88
18-1.3111.002-1.115-0.388
19-0.4320.2790.614-1.705
200.384-0.8780.496-0.747
21-0.346-0.3880.747-0.687
220.301-0.4780.0290.0