Model info
Transcription factorRFX5
ModelRFX5_HUMAN.H11MO.1.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length11
Quality
A
Motif rank
1
ConsensusYWGTTdCYRKG
Best auROC (human)0.925837177915598
Best auROC (mouse)
Peak sets in benchmark (human)14
Peak sets in benchmark (mouse)
Aligned words167
TF familyRFX-related factors{3.3.3}
TF subfamilyRFX5{3.3.3.0.5}
HGNC9986
EntrezGene5993
UniProt IDRFX5_HUMAN
UniProt ACP48382
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.629754999999999
0.0005 5.523125
0.0001 7.400885
GTEx tissue expression atlas RFX5 expression
ReMap ChIP-seq dataset list RFX5 datasets
Motifs in JASPAR
PCM
ACGT
0110.0107.016.034.0
0248.04.025.090.0
033.00.0162.02.0
040.02.00.0165.0
0513.021.02.0131.0
0627.06.0107.027.0
071.0159.02.05.0
083.054.04.0106.0
09110.04.047.06.0
1026.05.0102.034.0
115.016.0145.01.0
PWM
ACGT
01-1.3390.923-0.912-0.199
020.136-2.098-0.4930.752
03-2.308-3.5151.334-2.574
04-3.515-2.574-3.5151.352
05-1.103-0.658-2.5741.123
06-0.42-1.7770.923-0.42
07-2.9381.315-2.574-1.925
08-2.3080.251-2.0980.914
090.95-2.0980.115-1.777
10-0.456-1.9250.876-0.199
11-1.925-0.9121.224-2.938