Model info
| Transcription factor | Rfx6 | ||||||||
| Model | RFX6_MOUSE.H11MO.0.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 11 | ||||||||
| Quality | C | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | bdGYWKCYnKG | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | 0.998 | ||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | 3 | ||||||||
| Aligned words | 501 | ||||||||
| TF family | RFX-related factors {3.3.3} | ||||||||
| TF subfamily | RFX6 (RFXDC-1) {3.3.3.0.6} | ||||||||
| MGI | MGI:2445208 | ||||||||
| EntrezGene | GeneID:320995 (SSTAR profile) | ||||||||
| UniProt ID | RFX6_MOUSE | ||||||||
| UniProt AC | Q8C7R7 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Rfx6 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 54.0 | 229.0 | 120.0 | 97.0 |
| 02 | 66.0 | 59.0 | 170.0 | 205.0 |
| 03 | 20.0 | 16.0 | 454.0 | 10.0 |
| 04 | 17.0 | 86.0 | 61.0 | 336.0 |
| 05 | 74.0 | 73.0 | 29.0 | 324.0 |
| 06 | 37.0 | 13.0 | 315.0 | 135.0 |
| 07 | 6.0 | 467.0 | 9.0 | 18.0 |
| 08 | 4.0 | 291.0 | 3.0 | 202.0 |
| 09 | 187.0 | 105.0 | 109.0 | 99.0 |
| 10 | 119.0 | 5.0 | 236.0 | 140.0 |
| 11 | 28.0 | 4.0 | 465.0 | 3.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.823 | 0.6 | -0.04 | -0.25 |
| 02 | -0.628 | -0.737 | 0.304 | 0.49 |
| 03 | -1.77 | -1.975 | 1.281 | -2.394 |
| 04 | -1.92 | -0.368 | -0.705 | 0.981 |
| 05 | -0.516 | -0.529 | -1.421 | 0.945 |
| 06 | -1.189 | -2.163 | 0.917 | 0.076 |
| 07 | -2.819 | 1.309 | -2.484 | -1.868 |
| 08 | -3.126 | 0.838 | -3.325 | 0.475 |
| 09 | 0.399 | -0.172 | -0.135 | -0.23 |
| 10 | -0.049 | -2.961 | 0.63 | 0.112 |
| 11 | -1.454 | -3.126 | 1.305 | -3.325 |