Model info
Transcription factorRHOXF1
ModelRHXF1_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceHT-SELEX
Model releaseHOCOMOCOv10
Model length11
Quality
D
Motif rank
0
ConsensusnvbGGAThWdv
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words3731
TF familyPaired-related HD factors{3.1.3}
TF subfamilyRHOX{3.1.3.23}
HGNC29993
EntrezGene158800
UniProt IDRHXF1_HUMAN
UniProt ACQ8NHV9
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.424849999999999
0.0005 6.144875000000001
0.0001 7.398009999999999
GTEx tissue expression atlas RHOXF1 expression
ReMap ChIP-seq dataset list RHOXF1 datasets
Motifs in JASPAR
PCM
ACGT
011013.1661111.182871.501571.884
021153.47526.9061449.459437.898
03389.216405.2492002.654770.615
0496.92238.6133396.23635.962
056.0084.5953539.63917.492
062784.027656.856111.65215.198
0726.68216.07923.3183501.654
08535.841311.678194.8551525.36
092663.606142.475223.033538.619
101277.343397.0850.5191042.871
11576.8551540.0931013.516437.27
PWM
ACGT
010.1270.219-0.023-0.443
020.257-0.5250.485-0.709
03-0.826-0.7860.808-0.146
04-2.201-3.091.335-3.158
05-4.71-4.9031.377-3.823
061.137-0.305-2.062-3.948
07-3.438-3.898-3.5621.366
08-0.5080.385-1.5130.536
091.093-1.822-1.379-0.503
100.358-0.807-0.0470.156
11-0.4350.5450.128-0.71