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Model info
Transcription factorRora
ModelRORA_MOUSE.H11DI.0.B
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length16
Quality
B
Motif rank
0
ConsensusndvhndRGGYCAvnvn
Best auROC (human)0.58
Best auROC (mouse)0.809
Peak sets in benchmark (human)2
Peak sets in benchmark (mouse)5
Aligned words501
TF familyThyroid hormone receptor-related factors (NR1) {2.1.2}
TF subfamilyROR (NR1F) {2.1.2.6}
MGIMGI:104661
EntrezGeneGeneID:19883
(SSTAR profile)
UniProt IDRORA_MOUSE
UniProt ACP51448
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 10.44576
0.0005 12.41161
0.0001 15.57881
GTEx tissue expression atlas Rora expression
Motifs in JASPAR
MA0071.1 (RORA; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0163.017.057.022.048.018.02.032.049.02.067.010.029.011.041.032.0
02106.033.030.020.026.010.05.07.068.036.036.027.048.017.024.07.0
03130.025.019.074.016.023.08.049.028.032.025.010.05.018.06.032.0
0430.058.054.037.037.023.06.032.023.06.016.013.017.068.059.021.0
0533.014.033.027.035.027.04.089.015.015.027.078.05.015.054.029.0
0671.01.016.00.060.01.09.01.093.02.022.01.0119.07.094.03.0
072.01.0334.06.00.00.011.00.00.01.0136.04.00.01.03.01.0
080.00.02.00.00.00.03.00.04.01.0477.02.00.00.011.00.0
093.01.00.00.01.00.00.00.068.087.027.0311.00.00.00.02.0
100.071.01.00.00.087.01.00.00.025.01.01.00.0307.00.06.0
110.00.00.00.0467.03.013.07.03.00.00.00.06.01.00.00.0
1286.0121.0208.061.00.02.02.00.02.06.02.03.02.02.02.01.0
1324.09.036.021.032.025.026.048.051.046.071.046.09.04.036.016.0
1418.04.082.012.031.017.017.019.034.023.094.018.011.030.078.012.0
1527.022.038.07.029.08.06.031.068.059.078.066.06.011.023.021.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.695-0.5990.595-0.3460.425-0.543-2.5840.0230.445-2.5840.756-1.114-0.074-1.0220.2690.023
021.2130.054-0.04-0.439-0.181-1.114-1.77-1.4540.7710.140.14-0.1440.425-0.599-0.26-1.454
031.416-0.22-0.490.855-0.658-0.302-1.3280.445-0.1080.023-0.22-1.114-1.77-0.543-1.60.023
04-0.040.6130.5420.1670.167-0.302-1.60.023-0.302-1.6-0.658-0.86-0.5990.7710.63-0.392
050.054-0.7880.054-0.1440.112-0.144-1.9751.039-0.721-0.721-0.1440.907-1.77-0.7210.542-0.074
060.814-3.126-0.658-4.40.646-3.126-1.215-3.1261.082-2.584-0.346-3.1261.328-1.4541.093-2.234
07-2.584-3.1262.358-1.6-4.4-4.4-1.022-4.4-4.4-3.1261.461-1.975-4.4-3.126-2.234-3.126
08-4.4-4.4-2.584-4.4-4.4-4.4-2.234-4.4-1.975-3.1262.714-2.584-4.4-4.4-1.022-4.4
09-2.234-3.126-4.4-4.4-3.126-4.4-4.4-4.40.7711.016-0.1442.287-4.4-4.4-4.4-2.584
10-4.40.814-3.126-4.4-4.41.016-3.126-4.4-4.4-0.22-3.126-3.126-4.42.274-4.4-1.6
11-4.4-4.4-4.4-4.42.693-2.234-0.86-1.454-2.234-4.4-4.4-4.4-1.6-3.126-4.4-4.4
121.0041.3451.8850.663-4.4-2.584-2.584-4.4-2.584-1.6-2.584-2.234-2.584-2.584-2.584-3.126
13-0.26-1.2150.14-0.3920.023-0.22-0.1810.4250.4850.3830.8140.383-1.215-1.9750.14-0.658
14-0.543-1.9750.957-0.938-0.008-0.599-0.599-0.490.083-0.3021.093-0.543-1.022-0.040.907-0.938
15-0.144-0.3460.193-1.454-0.074-1.328-1.6-0.0080.7710.630.9070.741-1.6-1.022-0.302-0.392