Model info
| Transcription factor | Rora | ||||||||
| Model | RORA_MOUSE.H11MO.0.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 13 | ||||||||
| Quality | C | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | vhbdRGGbCAvdR | ||||||||
| Best auROC (human) | 0.682 | ||||||||
| Best auROC (mouse) | 0.788 | ||||||||
| Peak sets in benchmark (human) | 2 | ||||||||
| Peak sets in benchmark (mouse) | 5 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | Thyroid hormone receptor-related factors (NR1) {2.1.2} | ||||||||
| TF subfamily | ROR (NR1F) {2.1.2.6} | ||||||||
| MGI | MGI:104661 | ||||||||
| EntrezGene | GeneID:19883 (SSTAR profile) | ||||||||
| UniProt ID | RORA_MOUSE | ||||||||
| UniProt AC | P51448 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Rora expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 267.0 | 114.0 | 73.0 | 46.0 |
| 02 | 224.0 | 65.0 | 49.0 | 162.0 |
| 03 | 80.0 | 197.0 | 137.0 | 86.0 |
| 04 | 126.0 | 35.0 | 82.0 | 257.0 |
| 05 | 275.0 | 8.0 | 212.0 | 5.0 |
| 06 | 36.0 | 2.0 | 441.0 | 21.0 |
| 07 | 10.0 | 3.0 | 474.0 | 13.0 |
| 08 | 37.0 | 86.0 | 121.0 | 256.0 |
| 09 | 1.0 | 475.0 | 22.0 | 2.0 |
| 10 | 481.0 | 4.0 | 5.0 | 10.0 |
| 11 | 172.0 | 61.0 | 228.0 | 39.0 |
| 12 | 149.0 | 39.0 | 213.0 | 99.0 |
| 13 | 102.0 | 50.0 | 305.0 | 43.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.752 | -0.091 | -0.529 | -0.979 |
| 02 | 0.578 | -0.643 | -0.918 | 0.256 |
| 03 | -0.439 | 0.45 | 0.091 | -0.368 |
| 04 | 0.008 | -1.242 | -0.415 | 0.714 |
| 05 | 0.782 | -2.584 | 0.523 | -2.961 |
| 06 | -1.215 | -3.573 | 1.252 | -1.725 |
| 07 | -2.394 | -3.325 | 1.324 | -2.163 |
| 08 | -1.189 | -0.368 | -0.032 | 0.711 |
| 09 | -3.903 | 1.326 | -1.681 | -3.573 |
| 10 | 1.338 | -3.126 | -2.961 | -2.394 |
| 11 | 0.316 | -0.705 | 0.595 | -1.138 |
| 12 | 0.174 | -1.138 | 0.528 | -0.23 |
| 13 | -0.201 | -0.898 | 0.885 | -1.044 |