Model info
Transcription factorRora
ModelRORA_MOUSE.H11MO.0.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length13
Quality
C
Motif rank
0
ConsensusvhbdRGGbCAvdR
Best auROC (human)0.6818119903270871
Best auROC (mouse)0.787508102301955
Peak sets in benchmark (human)2
Peak sets in benchmark (mouse)5
Aligned words500
TF familyThyroid hormone receptor-related factors (NR1){2.1.2}
TF subfamilyROR (NR1F){2.1.2.6}
MGI104661
EntrezGene19883
UniProt IDRORA_MOUSE
UniProt ACP51448
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.4142600000000005
0.0005 6.224015
0.0001 7.757685
GTEx tissue expression atlas Rora expression
Motifs in JASPAR
PCM
ACGT
01267.0114.073.046.0
02224.065.049.0162.0
0380.0197.0137.086.0
04126.035.082.0257.0
05275.08.0212.05.0
0636.02.0441.021.0
0710.03.0474.013.0
0837.086.0121.0256.0
091.0475.022.02.0
10481.04.05.010.0
11172.061.0228.039.0
12149.039.0213.099.0
13102.050.0305.043.0
PWM
ACGT
010.752-0.091-0.529-0.979
020.578-0.643-0.9180.256
03-0.4390.450.091-0.368
040.008-1.242-0.4150.714
050.782-2.5840.523-2.961
06-1.215-3.5731.252-1.725
07-2.394-3.3251.324-2.163
08-1.189-0.368-0.0320.711
09-3.9031.326-1.681-3.573
101.338-3.126-2.961-2.394
110.316-0.7050.595-1.138
120.174-1.1380.528-0.23
13-0.201-0.8980.885-1.044