Model info
Transcription factorRORC
ModelRORG_HUMAN.H11MO.0.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length12
Quality
C
Motif rank
0
ConsensusvdRWSTRRGKCA
Best auROC (human)
Best auROC (mouse)0.9102370979382033
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)19
Aligned words500
TF familyThyroid hormone receptor-related factors (NR1){2.1.2}
TF subfamilyROR (NR1F){2.1.2.6}
HGNC10260
EntrezGene6097
UniProt IDRORG_HUMAN
UniProt ACP51449
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.031495
0.0005 5.936115
0.0001 7.754525
GTEx tissue expression atlas RORC expression
ReMap ChIP-seq dataset list RORC datasets
Motifs in JASPAR
PCM
ACGT
01121.094.0215.070.0
02238.051.0123.088.0
03352.048.054.046.0
04325.09.025.0141.0
0542.0200.0228.030.0
0622.019.029.0430.0
07244.04.0250.02.0
08157.05.0318.020.0
0912.011.0468.09.0
1010.045.061.0384.0
115.0475.09.011.0
12489.01.07.03.0
PWM
ACGT
01-0.032-0.2810.537-0.57
020.638-0.879-0.016-0.346
031.027-0.938-0.823-0.979
040.948-2.484-1.5610.119
05-1.0670.4650.595-1.389
06-1.681-1.818-1.4211.227
070.663-3.1260.687-3.573
080.225-2.9610.926-1.77
09-2.234-2.3111.311-2.484
10-2.394-1.0-0.7051.114
11-2.9611.326-2.484-2.311
121.355-3.903-2.694-3.325