Model info
Transcription factorRorc
ModelRORG_MOUSE.H11MO.0.B
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length12
Quality
B
Motif rank
0
ConsensusvdRWSTRRGKCA
Best auROC (human)
Best auROC (mouse)0.91
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)19
Aligned words500
TF familyThyroid hormone receptor-related factors (NR1) {2.1.2}
TF subfamilyROR (NR1F) {2.1.2.6}
MGIMGI:104856
EntrezGeneGeneID:19885
(SSTAR profile)
UniProt IDRORG_MOUSE
UniProt ACP51450
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.126435
0.0005 6.039175
0.0001 7.879335
GTEx tissue expression atlas Rorc expression
Motifs in JASPAR
PCM
ACGT
01121.094.0215.070.0
02238.051.0123.088.0
03352.048.054.046.0
04325.09.025.0141.0
0542.0200.0228.030.0
0622.019.029.0430.0
07244.04.0250.02.0
08157.05.0318.020.0
0912.011.0468.09.0
1010.045.061.0384.0
115.0475.09.011.0
12489.01.07.03.0
PWM
ACGT
01-0.032-0.2810.537-0.57
020.638-0.879-0.016-0.346
031.027-0.938-0.823-0.979
040.948-2.484-1.5610.119
05-1.0670.4650.595-1.389
06-1.681-1.818-1.4211.227
070.663-3.1260.687-3.573
080.225-2.9610.926-1.77
09-2.234-2.3111.311-2.484
10-2.394-1.0-0.7051.114
11-2.9611.326-2.484-2.311
121.355-3.903-2.694-3.325