Transcription factor | Runx2 | ||||||||
Model | RUNX2_MOUSE.H11DI.0.A | ||||||||
Model type | Dinucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 13 | ||||||||
Quality | A | ||||||||
Motif rank | 0 | ||||||||
Consensus | nbYTGTGGTYdbn | ||||||||
Best auROC (human) | 0.856 | ||||||||
Best auROC (mouse) | 0.937 | ||||||||
Peak sets in benchmark (human) | 3 | ||||||||
Peak sets in benchmark (mouse) | 25 | ||||||||
Aligned words | 547 | ||||||||
TF family | Runt-related factors {6.4.1} | ||||||||
TF subfamily | Runx2 (PEBP2alphaA, CBF-alpha1) {6.4.1.0.1} | ||||||||
MGI | MGI:99829 | ||||||||
EntrezGene | GeneID:12393 (SSTAR profile) | ||||||||
UniProt ID | RUNX2_MOUSE | ||||||||
UniProt AC | Q08775 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | Runx2 expression | ||||||||
Motifs in JASPAR |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | 5.0 | 17.0 | 26.0 | 18.0 | 24.0 | 27.0 | 11.0 | 64.0 | 19.0 | 58.0 | 51.0 | 44.0 | 13.0 | 47.0 | 21.0 | 54.0 |
02 | 5.0 | 34.0 | 9.0 | 13.0 | 13.0 | 77.0 | 6.0 | 53.0 | 10.0 | 69.0 | 8.0 | 22.0 | 4.0 | 100.0 | 18.0 | 58.0 |
03 | 2.0 | 0.0 | 0.0 | 30.0 | 2.0 | 3.0 | 1.0 | 274.0 | 0.0 | 2.0 | 0.0 | 39.0 | 3.0 | 6.0 | 3.0 | 134.0 |
04 | 0.0 | 0.0 | 7.0 | 0.0 | 0.0 | 0.0 | 11.0 | 0.0 | 1.0 | 0.0 | 3.0 | 0.0 | 3.0 | 3.0 | 471.0 | 0.0 |
05 | 0.0 | 0.0 | 1.0 | 3.0 | 1.0 | 1.0 | 0.0 | 1.0 | 4.0 | 67.0 | 4.0 | 417.0 | 0.0 | 0.0 | 0.0 | 0.0 |
06 | 0.0 | 0.0 | 5.0 | 0.0 | 0.0 | 0.0 | 67.0 | 1.0 | 0.0 | 0.0 | 5.0 | 0.0 | 0.0 | 0.0 | 419.0 | 2.0 |
07 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 1.0 | 0.0 | 495.0 | 0.0 | 0.0 | 0.0 | 3.0 | 0.0 |
08 | 0.0 | 0.0 | 0.0 | 1.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 39.0 | 6.0 | 453.0 | 0.0 | 0.0 | 0.0 | 0.0 |
09 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 3.0 | 1.0 | 35.0 | 0.0 | 1.0 | 0.0 | 5.0 | 13.0 | 113.0 | 27.0 | 301.0 |
10 | 6.0 | 1.0 | 1.0 | 5.0 | 57.0 | 10.0 | 7.0 | 43.0 | 4.0 | 3.0 | 9.0 | 12.0 | 70.0 | 14.0 | 46.0 | 211.0 |
11 | 18.0 | 22.0 | 80.0 | 17.0 | 8.0 | 7.0 | 7.0 | 6.0 | 13.0 | 16.0 | 22.0 | 12.0 | 16.0 | 78.0 | 111.0 | 66.0 |
12 | 20.0 | 14.0 | 19.0 | 2.0 | 23.0 | 42.0 | 11.0 | 47.0 | 43.0 | 45.0 | 91.0 | 41.0 | 14.0 | 26.0 | 35.0 | 26.0 |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | -1.768 | -0.597 | -0.179 | -0.541 | -0.258 | -0.142 | -1.02 | 0.713 | -0.488 | 0.615 | 0.487 | 0.341 | -0.858 | 0.406 | -0.39 | 0.544 |
02 | -1.768 | 0.085 | -1.213 | -0.858 | -0.858 | 0.896 | -1.598 | 0.525 | -1.112 | 0.787 | -1.326 | -0.344 | -1.973 | 1.157 | -0.541 | 0.615 |
03 | -2.582 | -4.398 | -4.398 | -0.038 | -2.582 | -2.232 | -3.124 | 2.162 | -4.398 | -2.582 | -4.398 | 0.221 | -2.232 | -1.598 | -2.232 | 1.448 |
04 | -4.398 | -4.398 | -1.452 | -4.398 | -4.398 | -4.398 | -1.02 | -4.398 | -3.124 | -4.398 | -2.232 | -4.398 | -2.232 | -2.232 | 2.703 | -4.398 |
05 | -4.398 | -4.398 | -3.124 | -2.232 | -3.124 | -3.124 | -4.398 | -3.124 | -1.973 | 0.758 | -1.973 | 2.582 | -4.398 | -4.398 | -4.398 | -4.398 |
06 | -4.398 | -4.398 | -1.768 | -4.398 | -4.398 | -4.398 | 0.758 | -3.124 | -4.398 | -4.398 | -1.768 | -4.398 | -4.398 | -4.398 | 2.586 | -2.582 |
07 | -4.398 | -4.398 | -4.398 | -4.398 | -4.398 | -4.398 | -4.398 | -4.398 | -3.124 | -4.398 | 2.753 | -4.398 | -4.398 | -4.398 | -2.232 | -4.398 |
08 | -4.398 | -4.398 | -4.398 | -3.124 | -4.398 | -4.398 | -4.398 | -4.398 | -4.398 | 0.221 | -1.598 | 2.664 | -4.398 | -4.398 | -4.398 | -4.398 |
09 | -4.398 | -4.398 | -4.398 | -4.398 | -4.398 | -2.232 | -3.124 | 0.114 | -4.398 | -3.124 | -4.398 | -1.768 | -0.858 | 1.278 | -0.142 | 2.256 |
10 | -1.598 | -3.124 | -3.124 | -1.768 | 0.597 | -1.112 | -1.452 | 0.318 | -1.973 | -2.232 | -1.213 | -0.936 | 0.802 | -0.786 | 0.385 | 1.901 |
11 | -0.541 | -0.344 | 0.934 | -0.597 | -1.326 | -1.452 | -1.452 | -1.598 | -0.858 | -0.656 | -0.344 | -0.936 | -0.656 | 0.909 | 1.261 | 0.743 |
12 | -0.437 | -0.786 | -0.488 | -2.582 | -0.3 | 0.294 | -1.02 | 0.406 | 0.318 | 0.363 | 1.063 | 0.271 | -0.786 | -0.179 | 0.114 | -0.179 |