Model info
Transcription factorRXRA
ModelRXRA_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length20
Quality
A
Motif rank
0
ConsensusvdRdvddnvRRRGGKSAvdv
Best auROC (human)0.8673213467902477
Best auROC (mouse)0.9162144346028239
Peak sets in benchmark (human)52
Peak sets in benchmark (mouse)158
Aligned words500
TF familyRXR-related receptors (NR2){2.1.3}
TF subfamilyRetinoid X receptors (NR2B){2.1.3.1}
HGNC10477
EntrezGene6256
UniProt IDRXRA_HUMAN
UniProt ACP19793
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.04446
0.0005 5.86156
0.0001 7.533760000000001
GTEx tissue expression atlas RXRA expression
ReMap ChIP-seq dataset list RXRA datasets
Motifs in JASPAR
PCM
ACGT
01127.0112.0204.057.0
02151.046.0207.096.0
0378.044.0303.075.0
04119.046.0184.0151.0
05122.0121.0188.069.0
06234.021.0159.086.0
07101.072.0240.087.0
08143.090.0168.099.0
09118.0173.0168.041.0
10290.015.0130.065.0
11174.034.0278.014.0
12352.07.0137.04.0
1333.05.0455.07.0
148.020.0424.048.0
1524.017.0150.0309.0
1622.0395.057.026.0
17454.018.019.09.0
18127.088.0227.058.0
19198.062.0157.083.0
20122.072.0267.039.0
PWM
ACGT
010.016-0.1080.485-0.771
020.187-0.9790.5-0.26
03-0.464-1.0220.878-0.503
04-0.049-0.9790.3830.187
05-0.024-0.0320.404-0.584
060.621-1.7250.238-0.368
07-0.21-0.5430.646-0.357
080.133-0.3240.293-0.23
09-0.0570.3220.293-1.09
100.835-2.0340.039-0.643
110.327-1.270.793-2.096
121.027-2.6940.091-3.126
13-1.298-2.9611.283-2.694
14-2.584-1.771.213-0.938
15-1.6-1.920.180.898
16-1.6811.142-0.771-1.525
171.281-1.868-1.818-2.484
180.016-0.3460.591-0.754
190.455-0.6890.225-0.403
20-0.024-0.5430.752-1.138