Model info
Transcription factorRxra
ModelRXRA_MOUSE.H11MO.2.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length10
Quality
A
Motif rank
2
ConsensusRRGGTCAdRR
Best auROC (human)0.7835585126484859
Best auROC (mouse)0.9632876601855349
Peak sets in benchmark (human)52
Peak sets in benchmark (mouse)158
Aligned words365
TF familyRXR-related receptors (NR2){2.1.3}
TF subfamilyRetinoid X receptors (NR2B){2.1.3.1}
MGI98214
EntrezGene20181
UniProt IDRXRA_MOUSE
UniProt ACP28700
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.857984999999999
0.0005 5.937825
0.0001 8.074285
GTEx tissue expression atlas Rxra expression
Motifs in JASPAR
PCM
ACGT
01122.015.0216.012.0
02230.02.0131.02.0
032.01.0361.01.0
042.00.0265.098.0
050.07.01.0357.0
065.0345.015.00.0
07363.01.01.00.0
08201.031.090.043.0
0988.030.0231.016.0
1074.056.0219.016.0
PWM
ACGT
010.286-1.7280.852-1.929
020.915-3.2840.357-3.284
03-3.284-3.6231.363-3.623
04-3.284-4.1411.0560.07
05-4.141-2.393-3.6231.352
06-2.6621.318-1.728-4.141
071.369-3.623-3.623-4.141
080.781-1.049-0.014-0.735
09-0.036-1.080.919-1.669
10-0.206-0.4780.866-1.669