Model info
Transcription factorRXRB
ModelRXRB_HUMAN.H11MO.0.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length10
Quality
C
Motif rank
0
ConsensusWSAGGTCAbd
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words30
TF familyRXR-related receptors (NR2){2.1.3}
TF subfamilyRetinoid X receptors (NR2B){2.1.3.1}
HGNC10478
EntrezGene6257
UniProt IDRXRB_HUMAN
UniProt ACP28702
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.051119999999999
0.0005 5.738455
0.0001 7.072445
GTEx tissue expression atlas RXRB expression
ReMap ChIP-seq dataset list RXRB datasets
Motifs in JASPAR
PCM
ACGT
013.7142.4763.5916.219
022.8489.78113.3710.0
0322.0381.7332.2290.0
041.1140.022.6572.229
050.01.54821.9762.476
061.1140.01.11423.771
070.43322.7191.7331.114
0824.8861.1140.00.0
092.47612.8767.9242.724
1010.3383.2198.2334.21
PWM
ACGT
01-0.479-0.799-0.5070.845
02-0.6920.3710.662-2.195
031.139-1.055-0.877-2.195
04-1.333-2.1951.166-0.877
05-2.195-1.131.136-0.799
06-1.333-2.195-1.3331.212
07-1.7681.169-1.055-1.333
081.257-1.333-2.195-2.195
09-0.7990.6270.178-0.726
100.422-0.5950.213-0.376