Model info
| Transcription factor | Rxrb | ||||||||
| Model | RXRB_MOUSE.H11MO.0.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | Integrative | ||||||||
| Model release | HOCOMOCOv9 | ||||||||
| Model length | 10 | ||||||||
| Quality | C | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | WSAGGTCAbd | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 30 | ||||||||
| TF family | RXR-related receptors (NR2) {2.1.3} | ||||||||
| TF subfamily | Retinoid X receptors (NR2B) {2.1.3.1} | ||||||||
| MGI | MGI:98215 | ||||||||
| EntrezGene | GeneID:20182 (SSTAR profile) | ||||||||
| UniProt ID | RXRB_MOUSE | ||||||||
| UniProt AC | P28704 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Rxrb expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 3.714 | 2.476 | 3.59 | 16.219 |
| 02 | 2.848 | 9.781 | 13.371 | 0.0 |
| 03 | 22.038 | 1.733 | 2.229 | 0.0 |
| 04 | 1.114 | 0.0 | 22.657 | 2.229 |
| 05 | 0.0 | 1.548 | 21.976 | 2.476 |
| 06 | 1.114 | 0.0 | 1.114 | 23.771 |
| 07 | 0.433 | 22.719 | 1.733 | 1.114 |
| 08 | 24.886 | 1.114 | 0.0 | 0.0 |
| 09 | 2.476 | 12.876 | 7.924 | 2.724 |
| 10 | 10.338 | 3.219 | 8.233 | 4.21 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.479 | -0.799 | -0.507 | 0.845 |
| 02 | -0.692 | 0.371 | 0.662 | -2.195 |
| 03 | 1.139 | -1.055 | -0.877 | -2.195 |
| 04 | -1.333 | -2.195 | 1.166 | -0.877 |
| 05 | -2.195 | -1.13 | 1.136 | -0.799 |
| 06 | -1.333 | -2.195 | -1.333 | 1.212 |
| 07 | -1.768 | 1.169 | -1.055 | -1.333 |
| 08 | 1.257 | -1.333 | -2.195 | -2.195 |
| 09 | -0.799 | 0.627 | 0.178 | -0.726 |
| 10 | 0.422 | -0.595 | 0.213 | -0.376 |