Model info
Transcription factorRxrb
ModelRXRB_MOUSE.H11MO.0.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length10
Quality
C
Motif rank
0
ConsensusWSAGGTCAbd
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words30
TF familyRXR-related receptors (NR2){2.1.3}
TF subfamilyRetinoid X receptors (NR2B){2.1.3.1}
MGI98215
EntrezGene20182
UniProt IDRXRB_MOUSE
UniProt ACP28704
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.21358
0.0005 5.87274
0.0001 7.199925
GTEx tissue expression atlas Rxrb expression
Motifs in JASPAR
PCM
ACGT
013.7142.4763.5916.219
022.8489.78113.3710.0
0322.0381.7332.2290.0
041.1140.022.6572.229
050.01.54821.9762.476
061.1140.01.11423.771
070.43322.7191.7331.114
0824.8861.1140.00.0
092.47612.8767.9242.724
1010.3383.2198.2334.21
PWM
ACGT
01-0.479-0.799-0.5070.845
02-0.6920.3710.662-2.195
031.139-1.055-0.877-2.195
04-1.333-2.1951.166-0.877
05-2.195-1.131.136-0.799
06-1.333-2.195-1.3331.212
07-1.7681.169-1.055-1.333
081.257-1.333-2.195-2.195
09-0.7990.6270.178-0.726
100.422-0.5950.213-0.376