Model info
Transcription factorRxrg
ModelRXRG_MOUSE.H11MO.0.B
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length22
Quality
B
Motif rank
0
ConsensusvddvdbbvdRAGKTCAAGGYYW
Best auROC (human)
Best auROC (mouse)0.9519873420031323
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)7
Aligned words281
TF familyRXR-related receptors (NR2){2.1.3}
TF subfamilyRetinoid X receptors (NR2B){2.1.3.1}
MGI98216
EntrezGene20183
UniProt IDRXRG_MOUSE
UniProt ACP28705
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 2.94581
0.0005 4.18136
0.0001 6.780510000000001
GTEx tissue expression atlas Rxrg expression
Motifs in JASPAR
PCM
ACGT
0165.039.0149.028.0
02133.020.087.041.0
0363.032.0132.054.0
0453.042.0153.033.0
05103.033.0108.037.0
0638.041.050.0152.0
0725.0151.067.038.0
08146.047.055.033.0
0977.038.0121.045.0
10116.018.0141.06.0
11237.00.039.05.0
125.00.0275.01.0
135.04.0107.0165.0
143.014.06.0258.0
155.0270.04.02.0
16273.00.06.02.0
17228.04.038.011.0
1819.04.0257.01.0
1913.07.0255.06.0
2025.060.031.0165.0
218.0215.022.036.0
22222.011.023.025.0
PWM
ACGT
01-0.076-0.5730.741-0.891
020.629-1.2080.21-0.525
03-0.107-0.7630.621-0.257
04-0.275-0.5010.768-0.734
050.376-0.7340.423-0.624
06-0.598-0.525-0.3320.761
07-0.9980.755-0.046-0.598
080.721-0.392-0.239-0.734
090.09-0.5980.535-0.434
100.494-1.3060.687-2.269
111.202-3.929-0.573-2.414
12-2.414-3.9291.35-3.392
13-2.414-2.5840.4140.843
14-2.788-1.537-2.2691.286
15-2.4141.332-2.584-3.045
161.343-3.929-2.269-3.045
171.164-2.584-0.598-1.753
18-1.256-2.5841.283-3.392
19-1.604-2.1431.275-2.269
20-0.998-0.154-0.7930.843
21-2.031.105-1.119-0.65
221.137-1.753-1.077-0.998