Model info
Transcription factorRxrg
ModelRXRG_MOUSE.H11MO.1.B
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length10
Quality
B
Motif rank
1
ConsensusRAGKTCARRS
Best auROC (human)
Best auROC (mouse)0.946397049614962
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)7
Aligned words501
TF familyRXR-related receptors (NR2){2.1.3}
TF subfamilyRetinoid X receptors (NR2B){2.1.3.1}
MGI98216
EntrezGene20183
UniProt IDRXRG_MOUSE
UniProt ACP28705
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.243815
0.0005 6.04312
0.0001 7.747915
GTEx tissue expression atlas Rxrg expression
Motifs in JASPAR
PCM
ACGT
01195.041.0241.022.0
02395.05.097.02.0
038.012.0465.014.0
0416.019.0237.0227.0
0512.019.048.0420.0
0613.0432.044.010.0
07433.021.020.025.0
08327.036.0113.023.0
0967.025.0382.025.0
1043.060.0369.027.0
PWM
ACGT
010.442-1.0880.653-1.679
021.144-2.959-0.248-3.571
03-2.582-2.2321.307-2.094
04-1.973-1.8160.6360.593
05-2.232-1.816-0.9361.205
06-2.1611.233-1.02-2.392
071.236-1.723-1.768-1.56
080.956-1.213-0.098-1.638
09-0.611-1.561.111-1.56
10-1.042-0.7191.076-1.487