Model info
Transcription factorSCRT1
ModelSCRT1_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceHT-SELEX
Model releaseHOCOMOCOv10
Model length13
Quality
D
Motif rank
0
ConsensusKCAACAGGTKdbh
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words179
TF familyMore than 3 adjacent zinc finger factors{2.3.3}
TF subfamilySnail-like factors{2.3.3.2}
HGNC15950
EntrezGene83482
UniProt IDSCRT1_HUMAN
UniProt ACQ9BWW7
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 3.84541
0.0005 4.951575
0.0001 7.311014999999999
GTEx tissue expression atlas SCRT1 expression
ReMap ChIP-seq dataset list SCRT1 datasets
Motifs in JASPAR
PCM
ACGT
018.757.7599.7562.75
025.75163.754.754.75
03166.255.253.254.25
04172.251.253.252.25
053.0171.02.03.0
06178.00.00.01.0
0729.00.0150.00.0
081.01.0176.01.0
093.02.01.0173.0
1015.04.0130.030.0
1120.2519.2595.2544.25
1233.7536.7534.7573.75
1352.536.520.569.5
PWM
ACGT
01-1.522-1.6270.7860.33
02-1.8771.277-2.03-2.03
031.292-1.951-2.315-2.116
041.327-2.895-2.315-2.564
05-2.3721.32-2.637-2.372
061.359-3.57-3.57-2.998
07-0.419-3.571.19-3.57
08-2.998-2.9981.348-2.998
09-2.372-2.637-2.9981.331
10-1.039-2.1631.048-0.386
11-0.759-0.8070.74-0.011
12-0.273-0.191-0.2450.488
130.156-0.197-0.7480.43