Model info
Transcription factorSHOX2
ModelSHOX2_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceHT-SELEX
Model releaseHOCOMOCOv10
Model length17
Quality
D
Motif rank
0
ConsensusbTAATTARbhhWWWWdd
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words30757
TF familyPaired-related HD factors{3.1.3}
TF subfamilySHOX{3.1.3.25}
HGNC10854
EntrezGene6474
UniProt IDSHOX2_HUMAN
UniProt ACO60902
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 2.80321
0.0005 4.5923099999999994
0.0001 8.05596
GTEx tissue expression atlas SHOX2 expression
ReMap ChIP-seq dataset list SHOX2 datasets
Motifs in JASPAR
PCM
ACGT
012132.9715266.5423534.8129494.725
02291.497577.455288.57229271.525
0330393.00811.52612.98911.526
0430429.0490.00.00.0
050.00.00.030429.049
063.6987.3126.62230411.417
0719191.3994.38711233.2630.0
0810037.1543825.88416179.971386.04
092895.6612108.3032979.36412445.722
105249.0699143.2432918.5113118.226
1112285.726922.8632074.7099145.756
1215966.3592798.207579.89211084.591
1314610.506383.30373.4215361.819
1414286.733112.93183.09815946.287
1513712.252428.236993.35515295.206
1610487.0041934.6923457.74514549.609
179580.7173619.5837879.2559349.493
PWM
ACGT
01-1.2710.696-0.7660.222
02-3.253-2.574-3.2631.347
031.385-6.291-6.192-6.291
041.386-7.989-7.989-7.989
05-7.989-7.989-7.9891.386
06-7.1-6.645-6.7181.385
070.925-6.9960.39-7.989
080.277-0.6870.754-2.975
09-0.9650.465-0.9370.492
10-0.3710.184-0.9570.545
110.479-0.094-1.2980.184
120.741-1.0-2.570.376
130.652-2.982-4.6060.703
140.63-4.188-4.4870.74
150.589-2.872-2.0340.698
160.321-1.368-0.7880.648
170.231-0.7420.0350.206