Model info
Transcription factorSHOX
ModelSHOX_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceHT-SELEX
Model releaseHOCOMOCOv10
Model length17
Quality
D
Motif rank
0
ConsensusbTAATTARbhhWWWWdd
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words17808
TF familyPaired-related HD factors{3.1.3}
TF subfamilySHOX{3.1.3.25}
HGNC10853
EntrezGene6473
UniProt IDSHOX_HUMAN
UniProt ACO15266
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 3.24951
0.0005 5.03386
0.0001 8.30706
GTEx tissue expression atlas SHOX expression
ReMap ChIP-seq dataset list SHOX datasets
Motifs in JASPAR
PCM
ACGT
011400.57005.52380.56993.5
02240.25385.25235.2516919.25
0317775.750.752.750.75
0417779.00.01.00.0
050.00.00.017780.0
062.00.04.017774.0
0710519.01.07259.01.0
085614.02365.09494.0307.0
091859.56191.52135.57593.5
102823.754291.751847.758816.75
117510.03408.01222.05640.0
129761.51607.5461.55949.5
138053.75325.7582.759317.75
147664.090.078.09948.0
157908.5397.5813.58660.5
166070.251308.252060.258341.25
175411.252412.253664.256292.25
PWM
ACGT
01-1.1540.455-0.6240.453
02-2.908-2.44-2.9291.336
031.386-7.238-6.752-7.238
041.386-7.505-7.163-7.505
05-7.505-7.505-7.5051.386
06-6.908-7.505-6.5371.386
070.861-7.1630.49-7.163
080.233-0.6310.759-2.665
09-0.8710.331-0.7320.535
10-0.453-0.035-0.8770.685
110.524-0.265-1.290.238
120.786-1.016-2.260.291
130.594-2.606-3.9550.74
140.545-3.873-4.0120.805
150.576-2.409-1.6960.667
160.311-1.222-0.7680.629
170.197-0.611-0.1930.347