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Model info
Transcription factorSIX1
(GeneCards)
ModelSIX1_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length15
Quality
A
Motif rank
0
ConsensusnKGWAAYhYGAbMYn
Best auROC (human)0.965
Best auROC (mouse)
Peak sets in benchmark (human)6
Peak sets in benchmark (mouse)
Aligned words511
TF familyHD-SINE factors {3.1.6}
TF subfamilySIX1-like factors {3.1.6.1}
HGNCHGNC:10887
EntrezGeneGeneID:6495
(SSTAR profile)
UniProt IDSIX1_HUMAN
UniProt ACQ15475
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 9.350760000000001
0.0005 11.42891
0.0001 15.61246
GTEx tissue expression atlas SIX1 expression
ReMap ChIP-seq dataset list SIX1 datasets
Motifs in JASPAR
MA1118.1 (SIX1; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0134.04.043.068.025.04.06.0101.024.03.024.059.013.00.026.066.0
020.01.095.00.00.00.010.01.01.01.097.00.07.01.0285.01.0
037.00.01.00.02.00.00.01.0225.016.018.0228.01.00.01.00.0
04219.03.00.013.013.01.00.02.019.01.00.00.0203.012.01.013.0
05450.01.02.01.017.00.00.00.00.00.01.00.028.00.00.00.0
0614.0254.019.0208.00.00.00.01.00.01.00.02.00.01.00.00.0
075.04.03.02.060.0118.03.075.08.07.02.02.040.063.017.091.0
0813.010.014.076.013.028.07.0144.02.02.02.019.011.018.030.0111.0
096.00.032.01.013.01.034.010.07.00.041.05.026.03.0314.07.0
1050.01.01.00.04.00.00.00.0418.00.03.00.021.00.01.01.0
1135.071.0146.0241.01.00.00.00.01.02.00.02.00.00.00.01.0
1222.012.01.02.044.023.01.05.070.064.02.010.0125.0105.06.08.0
1322.0160.015.064.016.099.05.084.01.07.00.02.04.018.02.01.0
147.011.018.07.049.0112.019.0104.01.09.06.06.019.047.065.020.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.083-1.9750.3160.771-0.22-1.975-1.61.165-0.26-2.234-0.260.63-0.86-4.4-0.1810.741
02-4.4-3.1261.104-4.4-4.4-4.4-1.114-3.126-3.126-3.1261.124-4.4-1.454-3.1262.199-3.126
03-1.454-4.4-3.126-4.4-2.584-4.4-4.4-3.1261.963-0.658-0.5431.977-3.126-4.4-3.126-4.4
041.936-2.234-4.4-0.86-0.86-3.126-4.4-2.584-0.49-3.126-4.4-4.41.861-0.938-3.126-0.86
052.656-3.126-2.584-3.126-0.599-4.4-4.4-4.4-4.4-4.4-3.126-4.4-0.108-4.4-4.4-4.4
06-0.7882.084-0.491.885-4.4-4.4-4.4-3.126-4.4-3.126-4.4-2.584-4.4-3.126-4.4-4.4
07-1.77-1.975-2.234-2.5840.6461.32-2.2340.868-1.328-1.454-2.584-2.5840.2440.695-0.5991.061
08-0.86-1.114-0.7880.881-0.86-0.108-1.4541.518-2.584-2.584-2.584-0.49-1.022-0.543-0.041.259
09-1.6-4.40.023-3.126-0.86-3.1260.083-1.114-1.454-4.40.269-1.77-0.181-2.2342.296-1.454
100.465-3.126-3.126-4.4-1.975-4.4-4.4-4.42.582-4.4-2.234-4.4-0.392-4.4-3.126-3.126
110.1120.8141.5322.032-3.126-4.4-4.4-4.4-3.126-2.584-4.4-2.584-4.4-4.4-4.4-3.126
12-0.346-0.938-3.126-2.5840.339-0.302-3.126-1.770.80.711-2.584-1.1141.3771.203-1.6-1.328
13-0.3461.623-0.7210.711-0.6581.145-1.770.981-3.126-1.454-4.4-2.584-1.975-0.543-2.584-3.126
14-1.454-1.022-0.543-1.4540.4451.268-0.491.194-3.126-1.215-1.6-1.6-0.490.4040.726-0.439