Model info
Transcription factorSIX1
ModelSIX1_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length14
Quality
A
Motif rank
0
ConsensusKGWAAYhKGAbMYb
Best auROC (human)0.9609236438105697
Best auROC (mouse)
Peak sets in benchmark (human)6
Peak sets in benchmark (mouse)
Aligned words500
TF familyHD-SINE factors{3.1.6}
TF subfamilySIX1-like factors{3.1.6.1}
HGNC10887
EntrezGene6495
UniProt IDSIX1_HUMAN
UniProt ACQ15475
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.80936
0.0005 5.826359999999999
0.0001 7.8563600000000005
GTEx tissue expression atlas SIX1 expression
ReMap ChIP-seq dataset list SIX1 datasets
Motifs in JASPAR
PCM
ACGT
0198.09.0103.0290.0
028.02.0489.01.0
03236.022.024.0218.0
04451.024.01.024.0
05496.02.01.01.0
0621.0247.024.0208.0
07109.0196.023.0172.0
0844.051.055.0350.0
0952.07.0423.018.0
10498.00.01.01.0
1138.074.0153.0235.0
12255.0211.012.022.0
1342.0294.020.0144.0
1469.0198.095.0138.0
PWM
ACGT
01-0.24-2.484-0.1910.835
02-2.584-3.5731.355-3.903
030.63-1.681-1.60.551
041.274-1.6-3.903-1.6
051.369-3.573-3.903-3.903
06-1.7250.675-1.60.504
07-0.1350.445-1.640.316
08-1.022-0.879-0.8051.022
09-0.86-2.6941.21-1.868
101.373-4.4-3.903-3.903
11-1.163-0.5160.20.626
120.7070.519-2.234-1.681
13-1.0670.848-1.770.14
14-0.5840.455-0.2710.098