Model info
Transcription factorSIX2
ModelSIX2_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length13
Quality
A
Motif rank
0
ConsensusKGWAAYhhRAbMh
Best auROC (human)0.9682935884839825
Best auROC (mouse)0.9367311671030576
Peak sets in benchmark (human)18
Peak sets in benchmark (mouse)9
Aligned words500
TF familyHD-SINE factors{3.1.6}
TF subfamilySIX1-like factors{3.1.6.1}
HGNC10888
EntrezGene10736
UniProt IDSIX2_HUMAN
UniProt ACQ9NPC8
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.379415
0.0005 6.2441699999999996
0.0001 7.952639999999999
GTEx tissue expression atlas SIX2 expression
ReMap ChIP-seq dataset list SIX2 datasets
Motifs in JASPAR
PCM
ACGT
0183.06.0156.0255.0
0213.02.0476.09.0
03296.020.043.0141.0
04426.030.011.033.0
05492.05.02.01.0
0628.0250.034.0188.0
07112.0184.037.0167.0
0880.068.055.0297.0
0984.013.0369.034.0
10496.01.01.02.0
1137.080.0220.0163.0
12276.0181.014.029.0
1399.0266.033.0102.0
PWM
ACGT
01-0.403-2.8190.2190.707
02-2.163-3.5731.328-2.484
030.855-1.77-1.0440.119
041.217-1.389-2.311-1.298
051.361-2.961-3.573-3.903
06-1.4540.687-1.270.404
07-0.1080.383-1.1890.287
08-0.439-0.599-0.8050.858
09-0.392-2.1631.074-1.27
101.369-3.903-3.903-3.573
11-1.189-0.4390.560.263
120.7850.366-2.096-1.421
13-0.230.749-1.298-0.201