Model info
Transcription factorSix4
ModelSIX4_MOUSE.H11MO.0.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length14
Quality
C
Motif rank
0
ConsensusdGdMAbhdSAvhbb
Best auROC (human)
Best auROC (mouse)0.9118521334514325
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)4
Aligned words487
TF familyHD-SINE factors{3.1.6}
TF subfamilySIX4-like factors{3.1.6.3}
MGI106034
EntrezGene20474
UniProt IDSIX4_MOUSE
UniProt ACQ61321
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.388859999999999
0.0005 6.02961
0.0001 7.316410000000001
GTEx tissue expression atlas Six4 expression
Motifs in JASPAR
PCM
ACGT
01166.020.078.0223.0
0216.013.0444.014.0
03235.033.090.0129.0
04348.077.041.021.0
05410.05.053.019.0
0628.0236.0109.0114.0
07112.0251.031.093.0
0896.068.089.0234.0
0957.094.0323.013.0
10426.014.018.029.0
1156.0166.0212.053.0
12240.0124.061.062.0
1361.0232.0126.068.0
1475.0198.098.0116.0
PWM
ACGT
010.307-1.744-0.4380.599
02-1.95-2.1371.285-2.071
030.652-1.272-0.2980.057
041.042-0.451-1.064-1.699
051.205-2.936-0.816-1.792
06-1.4290.656-0.109-0.065
07-0.0820.717-1.332-0.265
08-0.234-0.573-0.3090.647
09-0.745-0.2550.968-2.137
101.243-2.071-1.842-1.395
11-0.7620.3070.549-0.816
120.6720.018-0.679-0.663
13-0.6790.6390.034-0.573
14-0.4770.481-0.214-0.048