Model info
Transcription factorSMAD1
ModelSMAD1_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length12
Quality
D
Motif rank
0
ConsensusdGCCTSTCTGYM
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words12
TF familySMAD factors{7.1.1}
TF subfamilyRegulatory Smads (R-Smad){7.1.1.1}
HGNC6767
EntrezGene4086
UniProt IDSMAD1_HUMAN
UniProt ACQ15797
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.965335
0.0005 5.641365
0.0001 7.085190000000001
GTEx tissue expression atlas SMAD1 expression
ReMap ChIP-seq dataset list SMAD1 datasets
Motifs in JASPAR
PCM
ACGT
015.2420.2733.972.455
020.05.7586.1820.0
030.978.7880.02.182
041.9398.9091.0910.0
050.970.970.010.0
060.973.1527.2730.545
070.00.5450.011.394
080.09.7582.1820.0
091.0910.00.010.848
100.00.010.8481.091
111.0917.6970.972.182
123.1526.6060.02.182
PWM
ACGT
010.486-1.3960.242-0.159
02-1.760.5710.635-1.76
03-0.8190.959-1.76-0.252
04-0.3430.972-0.745-1.76
05-0.819-0.819-1.761.08
06-0.8190.0450.784-1.129
07-1.76-1.129-1.761.204
08-1.761.057-0.252-1.76
09-0.745-1.76-1.761.157
10-1.76-1.761.157-0.745
11-0.7450.836-0.819-0.252
120.0450.695-1.76-0.252