Model info
| Transcription factor | Smad1 | ||||||||
| Model | SMAD1_MOUSE.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | Integrative | ||||||||
| Model release | HOCOMOCOv9 | ||||||||
| Model length | 12 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | dGCCTSTCTGYM | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 12 | ||||||||
| TF family | SMAD factors {7.1.1} | ||||||||
| TF subfamily | Regulatory Smads (R-Smad) {7.1.1.1} | ||||||||
| MGI | MGI:109452 | ||||||||
| EntrezGene | GeneID:17125 (SSTAR profile) | ||||||||
| UniProt ID | SMAD1_MOUSE | ||||||||
| UniProt AC | P70340 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Smad1 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 5.242 | 0.273 | 3.97 | 2.455 |
| 02 | 0.0 | 5.758 | 6.182 | 0.0 |
| 03 | 0.97 | 8.788 | 0.0 | 2.182 |
| 04 | 1.939 | 8.909 | 1.091 | 0.0 |
| 05 | 0.97 | 0.97 | 0.0 | 10.0 |
| 06 | 0.97 | 3.152 | 7.273 | 0.545 |
| 07 | 0.0 | 0.545 | 0.0 | 11.394 |
| 08 | 0.0 | 9.758 | 2.182 | 0.0 |
| 09 | 1.091 | 0.0 | 0.0 | 10.848 |
| 10 | 0.0 | 0.0 | 10.848 | 1.091 |
| 11 | 1.091 | 7.697 | 0.97 | 2.182 |
| 12 | 3.152 | 6.606 | 0.0 | 2.182 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.486 | -1.396 | 0.242 | -0.159 |
| 02 | -1.76 | 0.571 | 0.635 | -1.76 |
| 03 | -0.819 | 0.959 | -1.76 | -0.252 |
| 04 | -0.343 | 0.972 | -0.745 | -1.76 |
| 05 | -0.819 | -0.819 | -1.76 | 1.08 |
| 06 | -0.819 | 0.045 | 0.784 | -1.129 |
| 07 | -1.76 | -1.129 | -1.76 | 1.204 |
| 08 | -1.76 | 1.057 | -0.252 | -1.76 |
| 09 | -0.745 | -1.76 | -1.76 | 1.157 |
| 10 | -1.76 | -1.76 | 1.157 | -0.745 |
| 11 | -0.745 | 0.836 | -0.819 | -0.252 |
| 12 | 0.045 | 0.695 | -1.76 | -0.252 |