Model info
Transcription factorSMAD2
ModelSMAD2_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length15
Quality
A
Motif rank
0
ConsensusnvWGKCTSnYhCYhn
Best auROC (human)0.8643390965562068
Best auROC (mouse)0.844428170017032
Peak sets in benchmark (human)17
Peak sets in benchmark (mouse)26
Aligned words504
TF familySMAD factors{7.1.1}
TF subfamilyRegulatory Smads (R-Smad){7.1.1.1}
HGNC6768
EntrezGene4087
UniProt IDSMAD2_HUMAN
UniProt ACQ15796
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 9.29536
0.0005 10.995560000000001
0.0001 14.476560000000001
GTEx tissue expression atlas SMAD2 expression
ReMap ChIP-seq dataset list SMAD2 datasets
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0124.042.031.012.030.084.010.022.015.063.030.016.019.056.018.028.0
0221.010.05.052.057.017.07.0164.012.026.09.042.012.06.05.055.0
034.05.090.03.00.01.055.03.03.05.017.01.011.09.0284.09.0
040.00.01.017.01.00.00.019.018.026.054.0348.00.00.01.015.0
051.017.00.01.00.026.00.00.00.055.01.00.02.0386.08.03.0
060.00.00.03.02.04.00.0478.02.00.00.07.00.00.01.03.0
071.00.02.01.00.01.02.01.00.00.01.00.074.0114.0286.017.0
086.011.036.022.050.019.04.042.050.062.0111.068.00.01.08.010.0
097.080.09.010.09.071.03.010.010.0126.014.09.05.0119.08.010.0
107.06.010.08.0242.040.037.077.02.017.04.011.011.05.012.011.0
1112.0213.026.011.03.055.02.08.01.055.06.01.04.086.07.010.0
122.010.03.05.058.0256.08.087.03.029.07.02.02.019.02.07.0
1310.09.011.035.048.094.011.0161.05.04.03.08.05.033.020.043.0
1412.028.014.014.049.042.012.037.014.014.010.07.026.052.0101.068.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.260.293-0.008-0.938-0.040.981-1.114-0.346-0.7210.695-0.04-0.658-0.490.578-0.543-0.108
02-0.392-1.114-1.770.5040.595-0.599-1.4541.648-0.938-0.181-1.2150.293-0.938-1.6-1.770.56
03-1.975-1.771.05-2.234-4.4-3.1260.56-2.234-2.234-1.77-0.599-3.126-1.022-1.2152.196-1.215
04-4.4-4.4-3.126-0.599-3.126-4.4-4.4-0.49-0.543-0.1810.5422.399-4.4-4.4-3.126-0.721
05-3.126-0.599-4.4-3.126-4.4-0.181-4.4-4.4-4.40.56-3.126-4.4-2.5842.502-1.328-2.234
06-4.4-4.4-4.4-2.234-2.584-1.975-4.42.716-2.584-4.4-4.4-1.454-4.4-4.4-3.126-2.234
07-3.126-4.4-2.584-3.126-4.4-3.126-2.584-3.126-4.4-4.4-3.126-4.40.8551.2852.203-0.599
08-1.6-1.0220.14-0.3460.465-0.49-1.9750.2930.4650.6791.2590.771-4.4-3.126-1.328-1.114
09-1.4540.932-1.215-1.114-1.2150.814-2.234-1.114-1.1141.385-0.788-1.215-1.771.328-1.328-1.114
10-1.454-1.6-1.114-1.3282.0360.2440.1670.894-2.584-0.599-1.975-1.022-1.022-1.77-0.938-1.022
11-0.9381.909-0.181-1.022-2.2340.56-2.584-1.328-3.1260.56-1.6-3.126-1.9751.004-1.454-1.114
12-2.584-1.114-2.234-1.770.6132.092-1.3281.016-2.234-0.074-1.454-2.584-2.584-0.49-2.584-1.454
13-1.114-1.215-1.0220.1120.4251.093-1.0221.629-1.77-1.975-2.234-1.328-1.770.054-0.4390.316
14-0.938-0.108-0.788-0.7880.4450.293-0.9380.167-0.788-0.788-1.114-1.454-0.1810.5041.1650.771