Model info
Transcription factorSMAD2
ModelSMAD2_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length12
Quality
A
Motif rank
0
ConsensusWGKCTSnChCYb
Best auROC (human)0.8477790588248721
Best auROC (mouse)0.8080231673152709
Peak sets in benchmark (human)17
Peak sets in benchmark (mouse)26
Aligned words500
TF familySMAD factors{7.1.1}
TF subfamilyRegulatory Smads (R-Smad){7.1.1.1}
HGNC6768
EntrezGene4087
UniProt IDSMAD2_HUMAN
UniProt ACQ15796
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.88386
0.0005 5.715225
0.0001 7.420475
GTEx tissue expression atlas SMAD2 expression
ReMap ChIP-seq dataset list SMAD2 datasets
Motifs in JASPAR
PCM
ACGT
01107.037.024.0332.0
0222.037.0427.014.0
0326.060.073.0341.0
042.0483.04.011.0
0510.010.00.0480.0
0661.0108.0302.029.0
0781.0134.0125.0160.0
0816.0450.014.020.0
09268.059.027.0146.0
1024.0402.055.019.0
1180.0302.04.0114.0
1246.0131.054.0269.0
PWM
ACGT
01-0.153-1.189-1.60.969
02-1.681-1.1891.22-2.096
03-1.525-0.721-0.5290.996
04-3.5731.343-3.126-2.311
05-2.394-2.394-4.41.336
06-0.705-0.1440.875-1.421
07-0.4270.0690.00.244
08-1.9751.272-2.096-1.77
090.756-0.737-1.4890.154
10-1.61.16-0.805-1.818
11-0.4390.875-3.126-0.091
12-0.9790.046-0.8230.76