Model info
Transcription factorSmad2
ModelSMAD2_MOUSE.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length9
Quality
A
Motif rank
0
ConsensusdvTGYCTGb
Best auROC (human)0.8030958492989805
Best auROC (mouse)0.8851172283139844
Peak sets in benchmark (human)17
Peak sets in benchmark (mouse)26
Aligned words500
TF familySMAD factors{7.1.1}
TF subfamilyRegulatory Smads (R-Smad){7.1.1.1}
MGI108051
EntrezGene17126
UniProt IDSMAD2_MOUSE
UniProt ACQ62432
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.35084
0.0005 6.13791
0.0001 7.6928149999999995
GTEx tissue expression atlas Smad2 expression
Motifs in JASPAR
PCM
ACGT
0184.077.0100.0239.0
0256.0291.0106.047.0
039.06.00.0485.0
045.012.0457.026.0
057.0196.041.0256.0
0614.0444.09.033.0
0734.01.04.0461.0
0815.029.0448.08.0
0948.0160.0188.0104.0
PWM
ACGT
01-0.392-0.477-0.220.642
02-0.7880.838-0.163-0.958
03-2.484-2.819-4.41.347
04-2.961-2.2341.287-1.525
05-2.6940.445-1.090.711
06-2.0961.259-2.484-1.298
07-1.27-3.903-3.1261.296
08-2.034-1.4211.268-2.584
09-0.9380.2440.404-0.181