Model info
Transcription factorSMAD4
ModelSMAD4_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv10
Model length21
Quality
A
Motif rank
0
ConsensusnnbWGKCTvdCWSYYnnnnnn
Best auROC (human)0.8820382197883138
Best auROC (mouse)0.9259473020409656
Peak sets in benchmark (human)24
Peak sets in benchmark (mouse)3
Aligned words500
TF familySMAD factors{7.1.1}
TF subfamilyCo-activating Smads (Co-Smad){7.1.1.2}
HGNC6770
EntrezGene4089
UniProt IDSMAD4_HUMAN
UniProt ACQ13485
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 8.83656
0.0005 10.74381
0.0001 14.712860000000001
GTEx tissue expression atlas SMAD4 expression
ReMap ChIP-seq dataset list SMAD4 datasets
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0123.44622.00930.42726.51739.37665.6759.03264.51718.43630.0724.04818.3698.75431.45948.93638.929
0214.48328.18735.2612.08131.95466.53522.35328.37113.51347.01138.88313.03614.13158.00943.75232.441
0325.5066.17.12335.35260.88513.5512.373122.93328.17329.57813.32869.16917.0573.2847.50858.081
040.00.857129.0971.6670.8682.79244.1424.7110.02.10127.141.093.9737.551271.3392.671
050.00.00.04.8410.02.0121.03810.2518.42920.78879.513362.9870.03.7031.9554.482
060.8687.5610.00.00.89923.6820.01.9230.96676.8550.8463.8390.917378.0090.03.635
070.00.00.03.6512.9782.1410.0480.9880.00.00.00.8460.00.00.09.396
081.7360.01.2420.00.01.0810.01.060.00.00.00.0106.431112.363254.29721.79
097.5644.02148.91747.66557.73911.0723.79940.83452.1539.485102.07261.8323.610.07.90211.339
101.086104.6678.8276.4843.09748.4930.02.9891.642154.4394.6651.9432.047148.0485.4726.102
110.01.9334.1751.764343.51629.81128.86853.4517.6953.1120.9517.2062.6532.2176.4436.205
1221.895266.67846.98718.3031.83432.5590.02.683.06329.4475.4882.4390.057.6336.3694.625
130.90816.3077.5951.98352.3237.491.21495.3133.82236.4647.67110.8865.51612.4426.3223.767
1411.2689.32716.34625.60629.82545.4766.196221.2052.7043.9536.8319.31310.19727.2320.40954.113
156.04617.55422.9847.41129.39916.7174.08435.78610.07311.51516.00312.19144.33657.351105.681102.868
1619.09121.53826.70122.52523.67932.1630.90846.38831.31548.86826.1342.43913.60943.45752.49848.693
1719.81119.82222.10225.95824.48640.241.94479.35526.75518.17919.58941.71342.55423.7541.95851.783
1864.46215.19722.57211.37637.9428.0063.31332.73128.48827.41318.05611.63655.13528.09762.59152.986
1964.52722.15637.04262.329.33116.1022.87950.420.23818.17131.63936.48322.09330.27427.27529.089
2028.47112.74944.70750.26127.80430.750.028.1511.11526.82435.21425.68217.91265.51355.30139.546
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.283-0.345-0.026-0.1620.2290.736-1.2120.719-0.519-0.038-0.258-0.523-1.2410.0070.4440.217
02-0.755-0.1020.119-0.9310.0220.749-0.33-0.095-0.8220.4040.216-0.857-0.7790.6130.3330.037
03-0.2-1.584-1.4380.1220.661-0.82-2.4391.36-0.102-0.054-0.8360.788-0.595-2.154-1.3880.614
04-4.4-3.2351.409-2.734-3.226-2.2970.342-1.825-4.4-2.542-0.139-3.063-1.982-1.3832.15-2.336
05-4.4-4.4-4.4-1.8-4.4-2.579-3.099-1.09-1.278-0.4010.9262.441-4.4-2.045-2.603-1.871
06-3.226-1.381-4.4-4.4-3.202-0.273-4.4-2.617-3.1510.893-3.244-2.013-3.1882.482-4.4-2.062
07-4.4-4.4-4.4-2.058-2.241-2.526-4.42.722-4.4-4.4-4.4-3.244-4.4-4.4-4.4-1.174
08-2.701-4.4-2.966-4.4-4.4-3.07-4.4-3.084-4.4-4.4-4.4-4.41.2171.2712.086-0.355
09-1.381-1.9710.4440.4180.608-1.015-2.0220.2650.5070.2311.1750.676-2.069-4.4-1.339-0.992
10-3.0661.2-1.234-1.527-2.2060.435-4.4-2.237-2.7461.588-1.834-2.608-2.5641.546-1.686-1.584
11-4.4-2.612-1.936-2.6882.386-0.047-0.0780.532-1.365-2.201-3.162-1.427-2.342-2.497-1.533-1.568
12-0.3512.1330.404-0.526-2.6560.041-4.4-2.333-2.215-0.059-1.683-2.415-4.40.606-1.544-1.842
13-3.195-0.639-1.377-2.5910.512.017-2.9831.107-2.0170.153-1.368-1.032-1.679-0.903-1.551-2.03
14-0.999-1.181-0.637-0.197-0.0460.371-1.571.946-2.325-1.986-1.478-1.182-1.095-0.136-0.420.544
15-1.593-0.567-0.303-1.4-0.06-0.615-1.9560.134-1.107-0.978-0.658-0.9220.3460.6021.211.183
16-0.485-0.367-0.155-0.323-0.2740.028-3.1950.3910.0020.443-0.1770.303-0.8160.3260.5140.439
17-0.449-0.448-0.341-0.183-0.2410.25-2.6070.924-0.153-0.533-0.460.2860.305-0.2710.2920.5
180.718-0.708-0.321-0.9890.192-0.108-2.1460.046-0.091-0.129-0.54-0.9670.562-0.1050.6880.523
190.719-0.3390.1680.684-0.063-0.652-2.270.473-0.428-0.5330.0120.153-0.342-0.031-0.134-0.071
20-0.092-0.8790.3540.471-0.115-0.016-4.4-0.103-1.012-0.1510.118-0.194-0.5470.7340.5650.233