Model info
Transcription factorSMAD4
ModelSMAD4_HUMAN.H11MO.0.B
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length13
Quality
B
Motif rank
0
ConsensusvWGKCTSdCWSYh
Best auROC (human)0.8693231685564734
Best auROC (mouse)0.671392837190586
Peak sets in benchmark (human)24
Peak sets in benchmark (mouse)3
Aligned words497
TF familySMAD factors{7.1.1}
TF subfamilyCo-activating Smads (Co-Smad){7.1.1.2}
HGNC6770
EntrezGene4089
UniProt IDSMAD4_HUMAN
UniProt ACQ13485
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.49136
0.0005 5.418810000000001
0.0001 7.315275
GTEx tissue expression atlas SMAD4 expression
ReMap ChIP-seq dataset list SMAD4 datasets
Motifs in JASPAR
PCM
ACGT
01109.0223.0101.064.0
02153.050.026.0268.0
039.05.0470.013.0
0423.023.088.0363.0
051.0488.04.04.0
061.03.01.0492.0
0772.0105.0297.023.0
0896.073.0184.0144.0
0914.0467.08.08.0
10354.026.046.071.0
1126.0346.094.031.0
1267.0285.032.0113.0
1368.0104.047.0278.0
PWM
ACGT
01-0.1290.579-0.204-0.652
020.206-0.892-1.5190.762
03-2.478-2.9551.321-2.157
04-1.634-1.634-0.341.064
05-3.8981.359-3.121-3.121
06-3.898-3.319-3.8981.367
07-0.537-0.1660.864-1.634
08-0.254-0.5230.3890.146
09-2.0911.315-2.578-2.578
101.039-1.519-0.973-0.55
11-1.5191.016-0.275-1.352
12-0.6070.823-1.322-0.094
13-0.593-0.176-0.9520.798