Model info
Transcription factorSmad4
ModelSMAD4_MOUSE.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length12
Quality
A
Motif rank
0
ConsensusvWGbCTvnChSh
Best auROC (human)0.8351099836355966
Best auROC (mouse)0.8727284382736589
Peak sets in benchmark (human)24
Peak sets in benchmark (mouse)3
Aligned words489
TF familySMAD factors{7.1.1}
TF subfamilyCo-activating Smads (Co-Smad){7.1.1.2}
MGI894293
EntrezGene17128
UniProt IDSMAD4_MOUSE
UniProt ACP97471
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.21411
0.0005 5.88418
0.0001 7.256195
GTEx tissue expression atlas Smad4 expression
Motifs in JASPAR
PCM
ACGT
0198.0217.094.080.0
02111.040.037.0301.0
0314.034.0418.023.0
0437.083.098.0271.0
054.0429.09.047.0
060.08.03.0478.0
0776.096.0276.041.0
0894.099.0159.0137.0
0953.0391.034.011.0
10270.069.037.0113.0
1128.0340.074.047.0
1290.0237.039.0123.0
PWM
ACGT
01-0.2180.568-0.259-0.417
02-0.095-1.092-1.1670.894
03-2.075-1.2481.221-1.618
04-1.167-0.381-0.2180.789
05-3.1051.246-2.463-0.936
06-4.382-2.562-3.3041.354
07-0.468-0.2380.807-1.068
08-0.259-0.2080.260.113
09-0.821.154-1.248-2.289
100.785-0.562-1.167-0.078
11-1.4331.015-0.494-0.936
12-0.3020.656-1.1160.006