Model info
Transcription factorSMARCA1
ModelSMCA1_HUMAN.H11MO.0.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length12
Quality
C
Motif rank
0
ConsensusvMWRGAAKMAWn
Best auROC (human)0.9123793846735598
Best auROC (mouse)
Peak sets in benchmark (human)3
Peak sets in benchmark (mouse)
Aligned words442
TF familyMyb/SANT domain factors{3.5.1}
TF subfamilySMARCA-like factors{3.5.1.5}
HGNC11097
EntrezGene6594
UniProt IDSMCA1_HUMAN
UniProt ACP28370
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.82532
0.0005 6.64992
0.0001 8.27144
GTEx tissue expression atlas SMARCA1 expression
ReMap ChIP-seq dataset list SMARCA1 datasets
Motifs in JASPAR
PCM
ACGT
01105.0218.079.039.0
02198.0221.07.015.0
03263.056.040.082.0
04237.00.0193.011.0
0520.011.0405.05.0
06406.012.018.05.0
07421.04.08.08.0
0840.018.0318.065.0
09269.0152.011.09.0
10378.019.025.019.0
11114.024.025.0278.0
1299.077.0168.097.0
PWM
ACGT
01-0.0480.675-0.328-1.015
020.5790.689-2.574-1.912
030.861-0.664-0.99-0.291
040.758-4.2960.554-2.189
05-1.647-2.1891.291-2.841
061.294-2.112-1.745-2.841
071.33-3.008-2.463-2.463
08-0.99-1.7451.05-0.519
090.8840.317-2.189-2.363
101.222-1.695-1.438-1.695
110.033-1.477-1.4380.917
12-0.106-0.3530.417-0.126