Model info
Transcription factorSMARCA5
ModelSMCA5_HUMAN.H11MO.0.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length15
Quality
C
Motif rank
0
ConsensusGMvKnGAAWGSARWS
Best auROC (human)0.8050189775335321
Best auROC (mouse)0.5646302800704217
Peak sets in benchmark (human)3
Peak sets in benchmark (mouse)2
Aligned words410
TF familyMyb/SANT domain factors{3.5.1}
TF subfamilySMARCA-like factors{3.5.1.5}
HGNC11101
EntrezGene8467
UniProt IDSMCA5_HUMAN
UniProt ACO60264
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.60281
0.0005 5.53331
0.0001 7.480410000000001
GTEx tissue expression atlas SMARCA5 expression
ReMap ChIP-seq dataset list SMARCA5 datasets
Motifs in JASPAR
PCM
ACGT
0115.012.0366.011.0
02297.050.043.014.0
03206.099.083.016.0
0444.023.055.0282.0
0554.0120.0135.095.0
0635.047.0318.04.0
07338.013.030.023.0
08351.014.034.05.0
0950.020.045.0289.0
1047.04.0348.05.0
1110.0125.0263.06.0
12361.05.016.022.0
13240.070.087.07.0
14142.028.027.0207.0
1521.0274.074.035.0
PWM
ACGT
01-1.826-2.0271.277-2.104
021.069-0.688-0.834-1.889
030.705-0.02-0.193-1.768
04-0.812-1.431-0.5961.017
05-0.6130.170.286-0.06
06-1.033-0.7481.137-2.925
071.198-1.956-1.18-1.431
081.235-1.889-1.06-2.758
09-0.688-1.562-0.791.042
10-0.748-2.9251.227-2.758
11-2.1870.210.948-2.615
121.263-2.758-1.768-1.473
130.857-0.36-0.147-2.49
140.336-1.245-1.280.71
15-1.5160.989-0.306-1.033