Model info
Transcription factorSNAI2
ModelSNAI2_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length10
Quality
A
Motif rank
0
ConsensusdRCAGGTGYn
Best auROC (human)0.9830352570052141
Best auROC (mouse)0.8404013181395069
Peak sets in benchmark (human)11
Peak sets in benchmark (mouse)3
Aligned words500
TF familyMore than 3 adjacent zinc finger factors{2.3.3}
TF subfamilySnail-like factors{2.3.3.2}
HGNC11094
EntrezGene6591
UniProt IDSNAI2_HUMAN
UniProt ACO43623
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 3.163765
0.0005 4.044225
0.0001 5.985405
GTEx tissue expression atlas SNAI2 expression
ReMap ChIP-seq dataset list SNAI2 datasets
Motifs in JASPAR
PCM
ACGT
01200.036.0213.051.0
02215.02.0282.01.0
031.0499.00.00.0
04500.00.00.00.0
050.00.0500.00.0
060.00.0500.00.0
070.00.00.0500.0
080.00.0497.03.0
092.0281.0105.0112.0
10187.0116.094.0103.0
PWM
ACGT
010.465-1.2150.528-0.879
020.537-3.5730.807-3.903
03-3.9031.375-4.4-4.4
041.377-4.4-4.4-4.4
05-4.4-4.41.377-4.4
06-4.4-4.41.377-4.4
07-4.4-4.4-4.41.377
08-4.4-4.41.371-3.325
09-3.5730.803-0.172-0.108
100.399-0.074-0.281-0.191