Model info
Transcription factorSnai2
ModelSNAI2_MOUSE.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length11
Quality
A
Motif rank
0
ConsensusdRCAGGTGYnb
Best auROC (human)0.9735101091697516
Best auROC (mouse)0.8750781079844133
Peak sets in benchmark (human)11
Peak sets in benchmark (mouse)3
Aligned words494
TF familyMore than 3 adjacent zinc finger factors{2.3.3}
TF subfamilySnail-like factors{2.3.3.2}
MGI1096393
EntrezGene20583
UniProt IDSNAI2_MOUSE
UniProt ACP97469
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 3.1436599999999997
0.0005 4.075565
0.0001 7.13848
GTEx tissue expression atlas Snai2 expression
Motifs in JASPAR
PCM
ACGT
01204.033.0209.048.0
02236.00.0255.03.0
030.0493.00.01.0
04494.00.00.00.0
051.00.0493.00.0
061.00.0493.00.0
071.00.00.0493.0
080.00.0492.02.0
0913.0299.076.0106.0
10176.0118.0103.097.0
1156.0107.0151.0180.0
PWM
ACGT
010.497-1.2860.521-0.926
020.642-4.390.719-3.313
03-4.391.375-4.39-3.892
041.377-4.39-4.39-4.39
05-3.892-4.391.375-4.39
06-3.892-4.391.375-4.39
07-3.892-4.39-4.391.375
08-4.39-4.391.373-3.562
09-2.1510.877-0.478-0.151
100.351-0.045-0.179-0.238
11-0.776-0.1420.1990.373