Model info
Transcription factorSOX13
ModelSOX13_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length8
Quality
D
Motif rank
0
ConsensusnATTGTKn
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words5
TF familySOX-related factors{4.1.1}
TF subfamilyGroup D{4.1.1.4}
HGNC11192
EntrezGene9580
UniProt IDSOX13_HUMAN
UniProt ACQ9UN79
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.296984999999999
0.0005 5.785195
0.0001 6.44116
GTEx tissue expression atlas SOX13 expression
ReMap ChIP-seq dataset list SOX13 datasets
Motifs in JASPAR
PCM
ACGT
010.8041.8750.8041.518
023.9290.00.01.071
030.00.00.05.0
040.00.00.05.0
051.0710.03.9290.0
060.00.00.05.0
070.00.7141.0713.214
080.8041.8750.8041.518
PWM
ACGT
01-0.3150.321-0.3150.15
020.964-1.413-1.413-0.114
03-1.413-1.413-1.4131.185
04-1.413-1.413-1.4131.185
05-0.114-1.4130.964-1.413
06-1.413-1.413-1.4131.185
07-1.413-0.392-0.1140.783
08-0.3150.321-0.3150.15