Model info
Transcription factorSox17
ModelSOX17_MOUSE.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length11
Quality
D
Motif rank
0
ConsensusbCCATYKTbbb
Best auROC (human)0.8347739627302879
Best auROC (mouse)
Peak sets in benchmark (human)4
Peak sets in benchmark (mouse)
Aligned words500
TF familySOX-related factors{4.1.1}
TF subfamilyGroup F{4.1.1.6}
MGI107543
EntrezGene20671
UniProt IDSOX17_MOUSE
UniProt ACQ61473
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.543075
0.0005 6.2819400000000005
0.0001 7.7865400000000005
GTEx tissue expression atlas Sox17 expression
Motifs in JASPAR
PCM
ACGT
0157.0142.0213.088.0
0216.0403.046.035.0
0320.0400.02.078.0
04444.08.02.046.0
052.010.05.0483.0
064.059.056.0381.0
0711.2533.25310.25145.25
0814.2511.257.25467.25
0967.2568.25138.25226.25
1037.25145.25114.25203.25
1165.25118.2598.25218.25
PWM
ACGT
01-0.7710.1260.528-0.346
02-1.9751.162-0.979-1.242
03-1.771.155-3.573-0.464
041.259-2.584-3.573-0.979
05-3.573-2.394-2.9611.343
06-3.126-0.737-0.7881.106
07-2.291-1.2910.9020.148
08-2.08-2.291-2.6651.31
09-0.609-0.5950.10.588
10-1.1820.148-0.0890.481
11-0.639-0.055-0.2370.552