Model info
Transcription factorSox18
ModelSOX18_MOUSE.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length19
Quality
D
Motif rank
0
ConsensusSMWhnMATTGTYbWnnYYC
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words8
TF familySOX-related factors{4.1.1}
TF subfamilyGroup F{4.1.1.6}
MGI103559
EntrezGene20672
UniProt IDSOX18_MOUSE
UniProt ACP43680
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.50326
0.0005 6.20476
0.0001 7.65561
GTEx tissue expression atlas Sox18 expression
Motifs in JASPAR
PCM
ACGT
011.2332.2194.3010.247
023.0682.9590.01.973
034.0550.00.9862.959
042.0822.9590.9861.973
051.9733.0681.9730.986
063.0683.9450.9860.0
075.0410.00.02.959
080.00.00.08.0
090.00.00.08.0
100.00.08.00.0
111.9730.00.06.027
120.9862.0820.04.932
130.9862.9591.9732.082
141.9730.9860.05.041
150.9862.9590.9863.068
160.9860.9862.9593.068
170.01.9730.9865.041
180.05.0410.9861.973
190.5216.4380.5210.521
PWM
ACGT
01-0.3630.0830.649-1.19
020.3530.322-1.578-0.011
030.596-1.578-0.5150.322
040.0320.322-0.515-0.011
05-0.0110.353-0.011-0.515
060.3530.572-0.515-1.578
070.792-1.578-1.5780.322
08-1.578-1.578-1.5781.218
09-1.578-1.578-1.5781.218
10-1.578-1.5781.218-1.578
11-0.011-1.578-1.5780.955
12-0.5150.032-1.5780.772
13-0.5150.322-0.0110.032
14-0.011-0.515-1.5780.792
15-0.5150.322-0.5150.353
16-0.515-0.5150.3220.353
17-1.578-0.011-0.5150.792
18-1.5780.792-0.515-0.011
19-0.8851.016-0.885-0.885