Model info
Transcription factorSOX1
ModelSOX1_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceHT-SELEX
Model releaseHOCOMOCOv10
Model length16
Quality
D
Motif rank
0
ConsensusdRTSAATGKTATTCAK
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words40
TF familySOX-related factors{4.1.1}
TF subfamilyGroup B{4.1.1.2}
HGNC11189
EntrezGene6656
UniProt IDSOX1_HUMAN
UniProt ACO00570
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.2958099999999995
0.0005 5.39706
0.0001 7.706710000000001
GTEx tissue expression atlas SOX1 expression
ReMap ChIP-seq dataset list SOX1 datasets
Motifs in JASPAR
PCM
ACGT
0112.04.014.010.0
0226.754.757.750.75
0311.250.250.2528.25
041.2513.2525.250.25
0540.00.00.00.0
0638.00.01.01.0
070.00.01.039.0
080.01.036.03.0
090.01.012.027.0
102.05.01.032.0
1140.00.00.00.0
120.00.06.034.0
130.00.01.039.0
140.025.015.00.0
1530.00.00.010.0
161.753.757.7526.75
PWM
ACGT
010.168-0.7970.3120.0
020.93-0.655-0.231-1.877
030.108-2.232-2.2320.982
04-1.6150.260.874-2.232
051.321-2.472-2.472-2.472
061.271-2.472-1.737-1.737
07-2.472-2.472-1.7371.296
08-2.472-1.7371.218-1.024
09-2.472-1.7370.1680.939
10-1.318-0.612-1.7371.103
111.321-2.472-2.472-2.472
12-2.472-2.472-0.4561.162
13-2.472-2.472-1.7371.296
14-2.4720.8640.377-2.472
151.041-2.472-2.4720.0
16-1.408-0.849-0.2310.93