Model info
Transcription factorSOX2
ModelSOX2_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length13
Quality
A
Motif rank
0
ConsensusbbYCTTTGTbhbb
Best auROC (human)0.9442415485390878
Best auROC (mouse)0.9217599281499689
Peak sets in benchmark (human)67
Peak sets in benchmark (mouse)109
Aligned words500
TF familySOX-related factors{4.1.1}
TF subfamilyGroup B{4.1.1.2}
HGNC11195
EntrezGene6657
UniProt IDSOX2_HUMAN
UniProt ACP48431
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.81351
0.0005 6.702415
0.0001 8.36516
GTEx tissue expression atlas SOX2 expression
ReMap ChIP-seq dataset list SOX2 datasets
Motifs in JASPAR
PCM
ACGT
0152.0114.0123.0211.0
0218.0176.0131.0175.0
035.0321.040.0134.0
048.0364.05.0123.0
05146.05.00.0349.0
060.01.01.0498.0
070.00.00.0500.0
088.078.0404.010.0
0931.09.00.0460.0
1023.0127.0104.0246.0
1153.0206.038.0203.0
1251.0156.068.0225.0
1338.0198.0129.0135.0
PWM
ACGT
01-0.86-0.091-0.0160.519
02-1.8680.3390.0460.333
03-2.9610.936-1.1140.069
04-2.5841.061-2.961-0.016
050.154-2.961-4.41.019
06-4.4-3.903-3.9031.373
07-4.4-4.4-4.41.377
08-2.584-0.4641.165-2.394
09-1.358-2.484-4.41.294
10-1.640.016-0.1810.671
11-0.8410.495-1.1630.48
12-0.8790.219-0.5990.582
13-1.1630.4550.0310.076