Model info
Transcription factorSOX2
ModelSOX2_HUMAN.H11MO.1.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length16
Quality
A
Motif rank
1
ConsensusbYYWTTSTbhTKYhdW
Best auROC (human)0.9573822275990939
Best auROC (mouse)0.955306696737152
Peak sets in benchmark (human)67
Peak sets in benchmark (mouse)109
Aligned words500
TF familySOX-related factors{4.1.1}
TF subfamilyGroup B{4.1.1.2}
HGNC11195
EntrezGene6657
UniProt IDSOX2_HUMAN
UniProt ACP48431
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.84431
0.0005 6.71171
0.0001 8.43576
GTEx tissue expression atlas SOX2 expression
ReMap ChIP-seq dataset list SOX2 datasets
Motifs in JASPAR
PCM
ACGT
0139.0136.0134.0191.0
0214.0316.075.095.0
0317.0339.09.0135.0
04191.022.07.0280.0
051.08.03.0488.0
064.00.02.0494.0
0726.0117.0348.09.0
0899.04.09.0388.0
0966.0140.088.0206.0
10254.0100.022.0124.0
1131.030.017.0422.0
128.095.0295.0102.0
1330.0267.053.0150.0
14263.053.048.0136.0
15211.070.0123.096.0
16316.058.031.095.0
PWM
ACGT
01-1.1380.0830.0690.42
02-2.0960.92-0.503-0.271
03-1.920.99-2.4840.076
040.42-1.681-2.6940.8
05-3.903-2.584-3.3251.353
06-3.126-4.4-3.5731.365
07-1.525-0.0651.016-2.484
08-0.23-3.126-2.4841.124
09-0.6280.112-0.3460.495
100.703-0.22-1.681-0.008
11-1.358-1.389-1.921.208
12-2.584-0.2710.852-0.201
13-1.3890.752-0.8410.18
140.737-0.841-0.9380.083
150.519-0.57-0.016-0.26
160.92-0.754-1.358-0.271