Model info
Transcription factorSox2
ModelSOX2_MOUSE.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length16
Quality
A
Motif rank
0
ConsensusbbYWTTSTnWTKYWdW
Best auROC (human)0.955
Best auROC (mouse)0.958
Peak sets in benchmark (human)67
Peak sets in benchmark (mouse)109
Aligned words499
TF familySOX-related factors {4.1.1}
TF subfamilyGroup B {4.1.1.2}
MGIMGI:98364
EntrezGeneGeneID:20674
(SSTAR profile)
UniProt IDSOX2_MOUSE
UniProt ACP48432
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.41991
0.0005 6.3682099999999995
0.0001 8.303160000000002
GTEx tissue expression atlas Sox2 expression
Motifs in JASPAR
PCM
ACGT
0135.092.0146.0226.0
0228.0281.071.0119.0
0325.0272.08.0194.0
04219.06.04.0270.0
051.011.05.0482.0
067.01.02.0489.0
0739.076.0372.012.0
0852.01.012.0434.0
09113.0124.078.0184.0
10340.039.033.087.0
1136.05.019.0439.0
1219.029.0375.076.0
1324.0317.059.099.0
14279.051.017.0152.0
15277.047.072.0103.0
16386.019.038.056.0
PWM
ACGT
01-1.24-0.30.1560.589
02-1.4520.805-0.554-0.047
03-1.560.773-2.5820.437
040.557-2.817-3.1240.765
05-3.901-2.309-2.9591.342
06-2.692-3.901-3.5711.357
07-1.136-0.4881.084-2.232
08-0.858-3.901-2.2321.238
09-0.098-0.006-0.4620.385
100.995-1.136-1.296-0.355
11-1.213-2.959-1.8161.249
12-1.816-1.4191.092-0.488
13-1.5980.925-0.735-0.228
140.798-0.877-1.9180.195
150.791-0.956-0.541-0.189
161.121-1.816-1.161-0.786