Model info
| Transcription factor | Sox2 | ||||||||
| Model | SOX2_MOUSE.H11MO.1.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 13 | ||||||||
| Quality | A | ||||||||
| Motif rank | 1 | ||||||||
| Consensus | hbYYWTTGTbhbb | ||||||||
| Best auROC (human) | 0.944 | ||||||||
| Best auROC (mouse) | 0.926 | ||||||||
| Peak sets in benchmark (human) | 67 | ||||||||
| Peak sets in benchmark (mouse) | 109 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | SOX-related factors {4.1.1} | ||||||||
| TF subfamily | Group B {4.1.1.2} | ||||||||
| MGI | MGI:98364 | ||||||||
| EntrezGene | GeneID:20674 (SSTAR profile) | ||||||||
| UniProt ID | SOX2_MOUSE | ||||||||
| UniProt AC | P48432 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Sox2 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 86.0 | 124.0 | 66.0 | 224.0 |
| 02 | 40.0 | 141.0 | 145.0 | 174.0 |
| 03 | 7.0 | 293.0 | 75.0 | 125.0 |
| 04 | 12.0 | 340.0 | 8.0 | 140.0 |
| 05 | 189.0 | 7.0 | 2.0 | 302.0 |
| 06 | 0.0 | 6.0 | 10.0 | 484.0 |
| 07 | 0.0 | 0.0 | 2.0 | 498.0 |
| 08 | 5.0 | 38.0 | 451.0 | 6.0 |
| 09 | 5.0 | 3.0 | 1.0 | 491.0 |
| 10 | 27.0 | 130.0 | 69.0 | 274.0 |
| 11 | 146.0 | 171.0 | 34.0 | 149.0 |
| 12 | 50.0 | 86.0 | 90.0 | 274.0 |
| 13 | 42.0 | 116.0 | 221.0 | 121.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.368 | -0.008 | -0.628 | 0.578 |
| 02 | -1.114 | 0.119 | 0.147 | 0.327 |
| 03 | -2.694 | 0.845 | -0.503 | 0.0 |
| 04 | -2.234 | 0.993 | -2.584 | 0.112 |
| 05 | 0.409 | -2.694 | -3.573 | 0.875 |
| 06 | -4.4 | -2.819 | -2.394 | 1.345 |
| 07 | -4.4 | -4.4 | -3.573 | 1.373 |
| 08 | -2.961 | -1.163 | 1.274 | -2.819 |
| 09 | -2.961 | -3.325 | -3.903 | 1.359 |
| 10 | -1.489 | 0.039 | -0.584 | 0.778 |
| 11 | 0.154 | 0.31 | -1.27 | 0.174 |
| 12 | -0.898 | -0.368 | -0.324 | 0.778 |
| 13 | -1.067 | -0.074 | 0.565 | -0.032 |