Model info
Transcription factorSOX3
ModelSOX3_HUMAN.H11DI.0.B
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length10
Quality
B
Motif rank
0
ConsensusbSYWTTGTbn
Best auROC (human)0.6852920696581799
Best auROC (mouse)0.88830800218863
Peak sets in benchmark (human)2
Peak sets in benchmark (mouse)4
Aligned words456
TF familySOX-related factors{4.1.1}
TF subfamilyGroup B{4.1.1.2}
HGNC11199
EntrezGene6658
UniProt IDSOX3_HUMAN
UniProt ACP41225
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 11.5506
0.0005 12.995215
0.0001 15.089555
GTEx tissue expression atlas SOX3 expression
ReMap ChIP-seq dataset list SOX3 datasets
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
011.022.021.08.04.089.04.031.01.0110.021.019.02.074.031.015.0
022.04.02.00.017.0199.03.076.01.060.08.08.04.060.08.01.0
035.01.01.017.0110.016.00.0197.014.00.00.07.038.02.02.043.0
040.02.06.0159.00.00.01.018.00.00.00.03.00.08.011.0245.0
050.00.00.00.00.00.00.010.00.00.01.017.01.07.07.0410.0
060.01.00.00.00.02.05.00.01.00.07.00.013.0102.0320.02.0
070.02.00.012.032.04.01.068.037.06.03.0286.00.01.00.01.0
0816.020.017.016.03.04.00.06.01.03.00.00.023.0128.085.0131.0
0911.08.014.010.031.051.08.065.017.037.017.031.018.052.043.040.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-3.033-0.248-0.294-1.231-1.8791.136-1.8790.09-3.0331.347-0.294-0.392-2.4890.9530.09-0.624
02-2.489-1.879-2.489-4.318-0.5011.939-2.1380.979-3.0330.744-1.231-1.231-1.8790.744-1.231-3.033
03-1.674-3.033-3.033-0.5011.347-0.561-4.3181.928-0.691-4.318-4.318-1.3580.291-2.489-2.4890.413
04-4.318-2.489-1.5031.715-4.318-4.318-3.033-0.445-4.318-4.318-4.318-2.138-4.318-1.231-0.9252.146
05-4.318-4.318-4.318-4.318-4.318-4.318-4.318-1.017-4.318-4.318-3.033-0.501-3.033-1.358-1.3582.66
06-4.318-3.033-4.318-4.318-4.318-2.489-1.674-4.318-3.033-4.318-1.358-4.318-0.7631.2722.413-2.489
07-4.318-2.489-4.318-0.840.121-1.879-3.0330.8680.264-1.503-2.1382.301-4.318-3.033-4.318-3.033
08-0.561-0.342-0.501-0.561-2.138-1.879-4.318-1.503-3.033-2.138-4.318-4.318-0.2051.4981.091.521
09-0.925-1.231-0.691-1.0170.090.583-1.2310.824-0.5010.264-0.5010.09-0.4450.6020.4130.342