Model info
Transcription factorSOX3
ModelSOX3_HUMAN.H11MO.0.B
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length11
Quality
B
Motif rank
0
ConsensusbYCWTTGTbhb
Best auROC (human)0.7169211617405029
Best auROC (mouse)0.8824389756201666
Peak sets in benchmark (human)2
Peak sets in benchmark (mouse)4
Aligned words500
TF familySOX-related factors{4.1.1}
TF subfamilyGroup B{4.1.1.2}
HGNC11199
EntrezGene6658
UniProt IDSOX3_HUMAN
UniProt ACP41225
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.468395
0.0005 6.53043
0.0001 8.304995000000002
GTEx tissue expression atlas SOX3 expression
ReMap ChIP-seq dataset list SOX3 datasets
Motifs in JASPAR
PCM
ACGT
0117.0128.0183.0172.0
024.0337.063.096.0
036.0377.03.0114.0
04164.05.03.0328.0
050.05.02.0493.0
060.00.01.0499.0
073.047.0448.02.0
084.01.01.0494.0
099.0173.0157.0161.0
1045.0220.031.0204.0
1155.0174.0114.0157.0
PWM
ACGT
01-1.920.0230.3770.316
02-3.1260.984-0.673-0.26
03-2.8191.096-3.325-0.091
040.269-2.961-3.3250.957
05-4.4-2.961-3.5731.363
06-4.4-4.4-3.9031.375
07-3.325-0.9581.268-3.573
08-3.126-3.903-3.9031.365
09-2.4840.3220.2250.25
10-1.00.56-1.3580.485
11-0.8050.327-0.0910.225