Model info
Transcription factorSox3
ModelSOX3_MOUSE.H11MO.0.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length11
Quality
C
Motif rank
0
ConsensusbYCTTTGTbnb
Best auROC (human)0.559
Best auROC (mouse)0.914
Peak sets in benchmark (human)2
Peak sets in benchmark (mouse)4
Aligned words344
TF familySOX-related factors {4.1.1}
TF subfamilyGroup B {4.1.1.2}
MGIMGI:98365
EntrezGene
UniProt IDSOX3_MOUSE
UniProt ACP53784
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.394325
0.0005 6.36095
0.0001 8.14725
GTEx tissue expression atlas Sox3 expression
Motifs in JASPAR
PCM
ACGT
0110.0109.0137.088.0
022.0260.035.047.0
039.0268.02.065.0
04105.04.01.0234.0
051.04.07.0332.0
060.00.02.0342.0
073.033.0305.03.0
081.00.01.0342.0
095.0121.088.0130.0
1035.0161.035.0113.0
1140.0117.078.0109.0
PWM
ACGT
01-2.0320.2330.4590.023
02-3.231.095-0.875-0.59
03-2.1241.125-3.23-0.275
040.197-2.774-3.5710.99
05-3.571-2.774-2.3361.338
06-4.093-4.093-3.231.368
07-2.976-0.9311.254-2.976
08-3.571-4.093-3.5711.368
09-2.6060.3370.0230.408
10-0.8750.619-0.8750.269
11-0.7460.303-0.0960.233