Model info
Transcription factorSOX4
ModelSOX4_HUMAN.H11MO.0.B
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length12
Quality
B
Motif rank
0
ConsensusbYCTTTGTYYbb
Best auROC (human)0.639614738320438
Best auROC (mouse)0.9783190527405211
Peak sets in benchmark (human)2
Peak sets in benchmark (mouse)7
Aligned words500
TF familySOX-related factors{4.1.1}
TF subfamilyGroup C{4.1.1.3}
HGNC11200
EntrezGene6659
UniProt IDSOX4_HUMAN
UniProt ACQ06945
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.6095
0.0005 6.48691
0.0001 8.241805
GTEx tissue expression atlas SOX4 expression
ReMap ChIP-seq dataset list SOX4 datasets
Motifs in JASPAR
PCM
ACGT
0120.0167.0118.0195.0
029.0266.061.0164.0
033.0402.04.091.0
0453.015.05.0427.0
052.08.018.0472.0
061.06.013.0480.0
0711.046.0424.019.0
086.010.07.0477.0
097.0167.060.0266.0
1014.0287.044.0155.0
1128.0181.081.0210.0
1260.0190.0103.0147.0
PWM
ACGT
01-1.770.287-0.0570.44
02-2.4840.749-0.7050.269
03-3.3251.16-3.126-0.313
04-0.841-2.034-2.9611.22
05-3.573-2.584-1.8681.32
06-3.903-2.819-2.1631.336
07-2.311-0.9791.213-1.818
08-2.819-2.394-2.6941.33
09-2.6940.287-0.7210.749
10-2.0960.824-1.0220.213
11-1.4540.366-0.4270.514
12-0.7210.415-0.1910.16