Model info
Transcription factorSox4
ModelSOX4_MOUSE.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length12
Quality
A
Motif rank
0
ConsensusbYCTTTGTYYbb
Best auROC (human)0.639614738320438
Best auROC (mouse)0.9783190527405211
Peak sets in benchmark (human)2
Peak sets in benchmark (mouse)7
Aligned words500
TF familySOX-related factors{4.1.1}
TF subfamilyGroup C{4.1.1.3}
MGI98366
EntrezGene20677
UniProt IDSOX4_MOUSE
UniProt ACQ06831
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.532835
0.0005 6.412565
0.0001 8.195430000000002
GTEx tissue expression atlas Sox4 expression
Motifs in JASPAR
PCM
ACGT
0120.0167.0118.0195.0
029.0266.061.0164.0
033.0402.04.091.0
0453.015.05.0427.0
052.08.018.0472.0
061.06.013.0480.0
0711.046.0424.019.0
086.010.07.0477.0
097.0167.060.0266.0
1014.0287.044.0155.0
1128.0181.081.0210.0
1260.0190.0103.0147.0
PWM
ACGT
01-1.770.287-0.0570.44
02-2.4840.749-0.7050.269
03-3.3251.16-3.126-0.313
04-0.841-2.034-2.9611.22
05-3.573-2.584-1.8681.32
06-3.903-2.819-2.1631.336
07-2.311-0.9791.213-1.818
08-2.819-2.394-2.6941.33
09-2.6940.287-0.7210.749
10-2.0960.824-1.0220.213
11-1.4540.366-0.4270.514
12-0.7210.415-0.1910.16