Model info
Transcription factorSOX5
ModelSOX5_HUMAN.H11MO.0.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length8
Quality
C
Motif rank
0
ConsensusbATTGTTh
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words69
TF familySOX-related factors{4.1.1}
TF subfamilyGroup D{4.1.1.4}
HGNC11201
EntrezGene6660
UniProt IDSOX5_HUMAN
UniProt ACP35711
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.5614799999999995
0.0005 6.16352
0.0001 7.777965
GTEx tissue expression atlas SOX5 expression
ReMap ChIP-seq dataset list SOX5 datasets
Motifs in JASPAR
PCM
ACGT
019.1121.66411.11627.539
0260.7060.04.0134.711
030.02.3564.52862.546
040.7850.7850.067.859
053.0452.35662.4591.57
060.7853.6560.064.989
073.832.9581.48361.158
0826.22910.8379.08423.28
PWM
ACGT
01-0.5940.21-0.4140.44
021.21-2.855-1.289-1.16
03-2.855-1.685-1.1931.239
04-2.301-2.301-2.8551.32
05-1.501-1.6851.238-1.946
06-2.301-1.362-2.8551.277
07-1.326-1.522-1.981.217
080.393-0.437-0.5960.279